From nobody Tue Jan 25 05:44:25 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 8955919762CD; Tue, 25 Jan 2022 05:44:25 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JjbQK38tkz3scl; Tue, 25 Jan 2022 05:44:25 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1643089465; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=fa0AkXAs5BMh6r3hKCY1LphyXkt7ydRQmcxRrXW67sY=; b=F8WD/qAx/4kQAegVJh4EZNOrDF0q8AHdVikSFh7gzQFUVFFrFpGyHhz8sFHeHdLdSLlEvn OHPxEv7ijML8ZW5YB27HZC+mDFqDg8wPe/KKHVZFki0WcJPLagZXXMdA2N8/19tYECYpAe gyGTBrrXhKTnS/D6n9m3sLX+8eAH74kXONqvtQ3pb+QAwMFhkG6X6cixGhW5w/YUITVc5B XV80PEXnTno3LVjylNo/9R+cr2v/oLBaaciK/o1MCwwfE2F3Mg68E6f+g41oeFxBNo1lUC bzXEXi9L3zooPNEdpFmfBVqBvOd9r1szRv8Fgg7hFeEGWFLUAIg2ovzAa4TKSQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 423E024163; Tue, 25 Jan 2022 05:44:25 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 20P5iPno076952; Tue, 25 Jan 2022 05:44:25 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 20P5iPvY076951; Tue, 25 Jan 2022 05:44:25 GMT (envelope-from git) Date: Tue, 25 Jan 2022 05:44:25 GMT Message-Id: <202201250544.20P5iPvY076951@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 8615039c0cdd - main - biology/viennarna: Update 2.4.18 -> 2.5.0 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 8615039c0cddc4eb7cc313105ad85ca7e1e0b0ff Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1643089465; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=fa0AkXAs5BMh6r3hKCY1LphyXkt7ydRQmcxRrXW67sY=; b=CmUcAX5JSKp3uqaJpGpvbB/ywTQFSgw1tsZcB9gvY37JFB0lxotbTqJbAiXCl1evwmMkQ0 0sGXEBG8Y6gelk8znUEwFbkhmVEksPjnGW4zWs26F+hNGLpeqt0lJsjrAUwe1IYXSqqiM3 X3m1irxFq6lD9Pcg1xA/p6WOUw05fzE3ja1z0SUSBXfdj6/jE22dCVOIk99OIvb+uPrEwT 6ZhT/hTS+BgxIasS4zNHPP+tJVRgrwhG1FMUaiHhdTdFa4kfwS4z6AFG+UqG4mlBb0xPHS 89nzVH4P4m5aLcgr+zkUjfo3AgUfTqryyUz5TccQY2cdsUTaZhPnVaypRV11MQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1643089465; a=rsa-sha256; cv=none; b=trs8vv5QQJdvh5Aic8tkwc2MZttGHsXGA6HYeFKnnBJeWFfL+fliIT9zARHHJPS9Vk0sOd Z9mzsCHlIiNV+jbRAEJ2p1ZJfcRsdjDlaYfjm1KkmPD42pVa+UEiQtQ4U+Epmh/LNX5tZd pDpFI248mqjPhT+ZN8bdq3wX7Q2j0JpQ+mUaS9rXF8Vb+HR9mh0y1rW1qYK4SDkurK9bKh /05a1bKqjVy1Rnc/i1zeCifdNjkWY84SEciOkvLFnkWmIAFr0qKJ0SMVTZLTx6GZypk9i/ McTq8UxJF5T8y84K02VzkOScsyTl60bwTo3BZK29J6xTg7ypnLkVp0qcMe55hg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=8615039c0cddc4eb7cc313105ad85ca7e1e0b0ff commit 8615039c0cddc4eb7cc313105ad85ca7e1e0b0ff Author: Yuri Victorovich AuthorDate: 2022-01-25 05:03:02 +0000 Commit: Yuri Victorovich CommitDate: 2022-01-25 05:44:21 +0000 biology/viennarna: Update 2.4.18 -> 2.5.0 --- biology/viennarna/Makefile | 5 ++--- biology/viennarna/distinfo | 6 +++--- biology/viennarna/pkg-plist | 5 +++++ 3 files changed, 10 insertions(+), 6 deletions(-) diff --git a/biology/viennarna/Makefile b/biology/viennarna/Makefile index 5f0456b22f22..5b3d547a7f14 100644 --- a/biology/viennarna/Makefile +++ b/biology/viennarna/Makefile @@ -1,8 +1,7 @@ PORTNAME= viennarna -DISTVERSION= 2.4.18 -PORTREVISION= 2 +DISTVERSION= 2.5.0 CATEGORIES= biology -MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ +MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_5_x/ DISTNAME= ViennaRNA-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/viennarna/distinfo b/biology/viennarna/distinfo index eeb985c063c4..a39942444d22 100644 --- a/biology/viennarna/distinfo +++ b/biology/viennarna/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1619228835 -SHA256 (ViennaRNA-2.4.18.tar.gz) = 7caa723f5e5cd61a60aba60b24a64db39817a76244293754b00fe83a1dab609d -SIZE (ViennaRNA-2.4.18.tar.gz) = 39772465 +TIMESTAMP = 1643064934 +SHA256 (ViennaRNA-2.5.0.tar.gz) = b85544650ee316743173ec9b30497cc4c559f1bfb8f66d16c563f780afd8c0c5 +SIZE (ViennaRNA-2.5.0.tar.gz) = 59332268 diff --git a/biology/viennarna/pkg-plist b/biology/viennarna/pkg-plist index 545120ce7098..4bb410abf849 100644 --- a/biology/viennarna/pkg-plist +++ b/biology/viennarna/pkg-plist @@ -27,6 +27,7 @@ bin/RNApvmin bin/RNAsnoop bin/RNAsubopt bin/RNAup +bin/RNAmultifold bin/b2ct bin/ct2db bin/kinwalker @@ -126,6 +127,7 @@ include/ViennaRNA/part_func_co.h include/ViennaRNA/part_func_up.h include/ViennaRNA/part_func_window.h include/ViennaRNA/perturbation_fold.h +include/ViennaRNA/pf_multifold.h include/ViennaRNA/pk_plex.h include/ViennaRNA/plex.h include/ViennaRNA/plot_aln.h @@ -153,6 +155,7 @@ include/ViennaRNA/stringdist.h include/ViennaRNA/structure_utils.h include/ViennaRNA/structured_domains.h include/ViennaRNA/subopt.h +include/ViennaRNA/subopt_zuker.h include/ViennaRNA/svm.h include/ViennaRNA/svm_utils.h include/ViennaRNA/treedist.h @@ -169,6 +172,7 @@ include/ViennaRNA/utils/svm.h include/ViennaRNA/utils/units.h include/ViennaRNA/vrna_config.h include/ViennaRNA/walk.h +include/ViennaRNA/wrap_dlib.h include/ViennaRNA/zscore.h include/g2.h include/g2_FIG.h @@ -197,6 +201,7 @@ man/man1/RNAforester.1.gz man/man1/RNAheat.1.gz man/man1/RNAinverse.1.gz man/man1/RNAlocmin.1.gz +man/man1/RNAmultifold.1.gz man/man1/RNApaln.1.gz man/man1/RNAparconv.1.gz man/man1/RNApdist.1.gz