From nobody Sat Jan 08 00:05:45 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 2D01C1937A30; Sat, 8 Jan 2022 00:05:46 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JW0jP6FgMz3nlm; Sat, 8 Jan 2022 00:05:45 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B2CE0148D7; Sat, 8 Jan 2022 00:05:45 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 20805jog075030; Sat, 8 Jan 2022 00:05:45 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 20805jcR075029; Sat, 8 Jan 2022 00:05:45 GMT (envelope-from git) Date: Sat, 8 Jan 2022 00:05:45 GMT Message-Id: <202201080005.20805jcR075029@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 231919fc1935 - main - biology/vsearch: Update to 2.19.0 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 231919fc1935355a5f7dc5466844c04cb51c6444 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1641600345; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=va3DMt3HpzywvDVJFhoKdEmvkH4HGPUMEn+nniPOHvM=; b=s6ySsVhApQ15vdTgda3SxQr5aZexXgq/PtGGGSVfqePaHC9zUJnuRD2amvj4By2yzCqc96 P+20/CCrnC9pyyHrBmJcGgT3ckQIYqyzzQNYmJ4wKIQV8e0MWPh9miO8jrj+WoANHUKX81 AidJaIK+aHcBvb8P0N01rDJdUHazQhNbNS1mtQs9YhQjlvUEqDocrr2SUXocxYd6+FXzkh eBHHW0XzQkFhCt2allE67iUL5JiUU3dn1lkYg8+tlmbkt1oAeYhzh99k4wFW7lH9C0rKBN SyR6kKW5uoqZUuKJKE7gjiqWrYVPUYwuW5WOk3t8frjpSeyrHn3BqTQWCfMaeg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1641600345; a=rsa-sha256; cv=none; b=yqLtGQGZFosxpFWdrnBubOFpEPUW5py74lYpEwhOl+OIHlH7EYk7OMDHy9LoQt6jatay9x WND/Rei+3lzn9N6/0C0q6t85QhpR1LPWcGkP0/R0n6WmzF4TXAPufSbHHF5epj6Klikuif VrCAlZNqeZjdq9yU4SEwPw8HBp8h8GzohH8iJ14HOeelST2dw9GMWdT1yC1wJO/SxqIn5c TP7L82lril4FpCuv2ytuzioYEmS2c0bgzAV5gsTgophzQ1Bruv6+4V5TdxbwYa4gSm5lRo 0MzfIXkjq1NZDj5Lh2apsA3rpx1e+k3mlQ2bXdUGhEPnvnZHduTdIOC9j6LwfQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=231919fc1935355a5f7dc5466844c04cb51c6444 commit 231919fc1935355a5f7dc5466844c04cb51c6444 Author: Jason W. Bacon AuthorDate: 2022-01-08 00:04:02 +0000 Commit: Jason W. Bacon CommitDate: 2022-01-08 00:04:02 +0000 biology/vsearch: Update to 2.19.0 A few bug fixes, new subcommands and options Changes: https://github.com/torognes/vsearch/tags Reporte by: portscout --- biology/vsearch/Makefile | 8 ++++---- biology/vsearch/distinfo | 6 +++--- biology/vsearch/files/patch-configure.ac | 13 ------------- biology/vsearch/files/patch-src_Makefile.am | 18 ------------------ 4 files changed, 7 insertions(+), 38 deletions(-) diff --git a/biology/vsearch/Makefile b/biology/vsearch/Makefile index 7ebf356c1c06..7a264f379a41 100644 --- a/biology/vsearch/Makefile +++ b/biology/vsearch/Makefile @@ -1,7 +1,7 @@ -PORTNAME= vsearch +PORTNAME= vsearch DISTVERSIONPREFIX= v -DISTVERSION= 2.17.1 -CATEGORIES= biology +DISTVERSION= 2.19.0 +CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Versatile open-source tool for metagenomics @@ -10,7 +10,7 @@ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE.txt ONLY_FOR_ARCHS= aarch64 amd64 powerpc64le -ONLY_FOR_ARCHS_REASON= explicitly enumerated by upstream developers +ONLY_FOR_ARCHS_REASON= Explicitly enumerated by upstream developers LIB_DEPENDS= libsysinfo.so:devel/libsysinfo diff --git a/biology/vsearch/distinfo b/biology/vsearch/distinfo index 6fe700db2278..ff23577ebb73 100644 --- a/biology/vsearch/distinfo +++ b/biology/vsearch/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1623856296 -SHA256 (torognes-vsearch-v2.17.1_GH0.tar.gz) = cee02a1fceb919db8916c6f114926a11166db15d2da79c1c1f680285435d39bc -SIZE (torognes-vsearch-v2.17.1_GH0.tar.gz) = 249268 +TIMESTAMP = 1641573705 +SHA256 (torognes-vsearch-v2.19.0_GH0.tar.gz) = 74bc30786512d07e49836320af1e745ef527c4472317621d3bd0b50cbc218736 +SIZE (torognes-vsearch-v2.19.0_GH0.tar.gz) = 253686 diff --git a/biology/vsearch/files/patch-configure.ac b/biology/vsearch/files/patch-configure.ac deleted file mode 100644 index 150d3745c8a2..000000000000 --- a/biology/vsearch/files/patch-configure.ac +++ /dev/null @@ -1,13 +0,0 @@ ---- configure.ac.orig 2021-01-30 15:11:25 UTC -+++ configure.ac -@@ -14,8 +14,8 @@ MACOSX_DEPLOYMENT_TARGET="10.9" - - # Set default gcc and g++ options - --CFLAGS='-g' --CXXFLAGS='-g -std=c++11' -+# CFLAGS='-g' -+# CXXFLAGS='-g -std=c++11' - - # Checks for programs. - AC_PROG_CXX diff --git a/biology/vsearch/files/patch-src_Makefile.am b/biology/vsearch/files/patch-src_Makefile.am deleted file mode 100644 index e54c9a606035..000000000000 --- a/biology/vsearch/files/patch-src_Makefile.am +++ /dev/null @@ -1,18 +0,0 @@ ---- src/Makefile.am.orig 2019-04-30 11:57:32 UTC -+++ src/Makefile.am -@@ -1,12 +1,12 @@ - bin_PROGRAMS = $(top_builddir)/bin/vsearch - - if TARGET_PPC --AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -mcpu=power8 -+AM_CXXFLAGS=-Wall -Wsign-compare - else - if TARGET_AARCH64 --AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=armv8-a+simd -mtune=generic -+AM_CXXFLAGS=-Wall -Wsign-compare - else --AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic -+AM_CXXFLAGS=-Wall -Wsign-compare - endif - endif -