From nobody Thu Feb 03 20:12:36 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 10EA419B69AF; Thu, 3 Feb 2022 20:12:37 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JqVFw6v0Zz56q9; Thu, 3 Feb 2022 20:12:36 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1643919157; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=YtuIgh8kVZenT8wYFvTrkaW+NpfvNwWmkpCbpVcfy+A=; b=SjFo6VK9lQb3HV68hTxlhJND6chkXUh5XHcJr/XmjLltNNikIoAIEzt96awZKniuPMteug uP9Fwv1BY9yBU4oEAOqYVfpl4OwXOu/jExP1+IDKO07Jgf3v0RFLhW1ymmFG9K1gBZWCJJ imUFkhfgNrqT7QOeNe4HUiTwE6Q4l+beUdyQgHS9ph1Pao4tk89lZWJVa5AnE6fDxnwprN wvhEWgsIoqCoBUy0Wid1cGrmM1UvE4fcWGC+cKeEr0LpvC6SGDfm2d7z7BNoJwE/OH+s0d P0zjaK4t+dqWuNjKkxX4CFGLZW3ucGNwW/Sx6nkrGBwinqB5e6RGJ1iFEaWJMA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id CD2091E437; Thu, 3 Feb 2022 20:12:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 213KCaGb095188; Thu, 3 Feb 2022 20:12:36 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 213KCatN095187; Thu, 3 Feb 2022 20:12:36 GMT (envelope-from git) Date: Thu, 3 Feb 2022 20:12:36 GMT Message-Id: <202202032012.213KCatN095187@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 0939abbdf631 - main - biology/py-dna-features-viewer: Add py-bcbio-gff dep List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 0939abbdf6313af011b2003e8872650e5e5eb1f3 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1643919157; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=YtuIgh8kVZenT8wYFvTrkaW+NpfvNwWmkpCbpVcfy+A=; b=QHVy7ePZjoNPkOVmO99xYJyHif6yKqaIynuO7ehWj+MVLkvub5uhLq5IAaDhzj87bZCB0b hhwFot/0hxlywOaVKetjNSza5clPsUi6iU524QOsy6K7UKvhU4lyyur5vmOQ+WAPJuw3P8 1jR25Bw0WaSXKu4cGHvXxbEGLqWySN6Pom1pBEJ0ZlZins9pBvak3CGOSBWE7YzPCshVLH PmAVgPiCPhtWWuUgF8c5ik3jANt2mvqkFcg6nyK/xB+vBlXR5KJBA7AmtT639O74QI6/R/ WDFq7rC6oFuNOZN7UJFl1vdvbRtwkYy3PJemTrAXtmqtTOFcO48ALVQ9AkhA3A== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1643919157; a=rsa-sha256; cv=none; b=lrc0iiBVkfQNmSEq6kftWQzhP5fKGAo9Ok2/Xy99tFEIKG9Tn4UTEe2SFvuIGdWzOm0mPq gEWNmMfR+j2xQJN8vc3gDtA23Z6sFxneuYlhCFb7KEXJMAdpors2RYXAwS4wvxw92o88/e qfbRxQmV/5CjQhYcGWRCEARCZssvZ3U/IhLtmY6cd4cPN+okzbokbKMjlZClbvBPvio9wi QxSd3/gkVu87VKhNejVI+D3uLE7wxi5B0pT4ibpp3Urn4D0qdVfLOG1Jnl2qOH0p0+Jv4p 1ZI2gZfsIJQ0iHIy4FODBYtjYFx4LrotIwQKGv6zkvukyySnO9M9bVNFn6Y9sw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=0939abbdf6313af011b2003e8872650e5e5eb1f3 commit 0939abbdf6313af011b2003e8872650e5e5eb1f3 Author: Jason W. Bacon AuthorDate: 2022-02-03 20:11:38 +0000 Commit: Jason W. Bacon CommitDate: 2022-02-03 20:11:38 +0000 biology/py-dna-features-viewer: Add py-bcbio-gff dep Needed to automatically extract features from GFF files --- biology/py-dna-features-viewer/Makefile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/biology/py-dna-features-viewer/Makefile b/biology/py-dna-features-viewer/Makefile index 7ea1d63d46e6..68b76e64e69a 100644 --- a/biology/py-dna-features-viewer/Makefile +++ b/biology/py-dna-features-viewer/Makefile @@ -1,5 +1,6 @@ PORTNAME= dna-features-viewer DISTVERSION= 3.1.0 +PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -12,7 +13,8 @@ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENCE.txt RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3:math/py-matplotlib@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR} + ${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}bcbio-gff>0:biology/py-bcbio-gff@${PY_FLAVOR} USES= python USE_PYTHON= autoplist distutils