git: d936c94c64a8 - main - biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=d936c94c64a84e88f8c9fbe350aa0445fda80a06

commit d936c94c64a84e88f8c9fbe350aa0445fda80a06
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2022-02-03 19:37:21 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2022-02-03 19:38:42 +0000

    biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)
    
    Read and write Generic Feature Format (GFF) with Biopython integration.
    
    Also adding py-dna-features-viewer to Makefile, missed on last commit
---
 biology/Makefile               |  2 ++
 biology/py-bcbio-gff/Makefile  | 16 ++++++++++++++++
 biology/py-bcbio-gff/distinfo  |  3 +++
 biology/py-bcbio-gff/pkg-descr |  3 +++
 4 files changed, 24 insertions(+)

diff --git a/biology/Makefile b/biology/Makefile
index 4e16a737f636..6712e8a40155 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -141,6 +141,7 @@
     SUBDIR += psi88
     SUBDIR += py-Genesis-PyAPI
     SUBDIR += py-PySCeS
+    SUBDIR += py-bcbio-gff
     SUBDIR += py-biom-format
     SUBDIR += py-biopython
     SUBDIR += py-bx-python
@@ -148,6 +149,7 @@
     SUBDIR += py-cutadapt
     SUBDIR += py-deeptools
     SUBDIR += py-deeptoolsintervals
+    SUBDIR += py-dna-features-viewer
     SUBDIR += py-dnaio
     SUBDIR += py-ete3
     SUBDIR += py-gffutils
diff --git a/biology/py-bcbio-gff/Makefile b/biology/py-bcbio-gff/Makefile
new file mode 100644
index 000000000000..b08f6d36f7f2
--- /dev/null
+++ b/biology/py-bcbio-gff/Makefile
@@ -0,0 +1,16 @@
+PORTNAME=	bcbio-gff
+DISTVERSION=	0.6.9
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	jwb@FreeBSD.org
+COMMENT=	Read and write Generic Feature Format (GFF) with Biopython integration
+
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+USES=		python
+USE_PYTHON=	autoplist distutils
+
+.include <bsd.port.mk>
diff --git a/biology/py-bcbio-gff/distinfo b/biology/py-bcbio-gff/distinfo
new file mode 100644
index 000000000000..72637728bd5c
--- /dev/null
+++ b/biology/py-bcbio-gff/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1643900022
+SHA256 (bcbio-gff-0.6.9.tar.gz) = 34dfa970e14f4533dc63c0a5512b7b5221e4a06449e6aaa344162ed5fdd7a1de
+SIZE (bcbio-gff-0.6.9.tar.gz) = 44236
diff --git a/biology/py-bcbio-gff/pkg-descr b/biology/py-bcbio-gff/pkg-descr
new file mode 100644
index 000000000000..2eec0e8e52a5
--- /dev/null
+++ b/biology/py-bcbio-gff/pkg-descr
@@ -0,0 +1,3 @@
+Read and write Generic Feature Format (GFF) with Biopython integration.
+
+WWW: https://pypi.python.org/project/bcbio-gff/