From nobody Sun Dec 11 21:24:06 2022 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4NVd6t70rLz4kT8y; Sun, 11 Dec 2022 21:24:06 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4NVd6t6Q34z47SZ; Sun, 11 Dec 2022 21:24:06 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1670793846; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=cJwUHmpzx7WeCZ3CJLvuS6paiKQVR4F4/Ca4nPhyKNM=; b=rnuZtxuZ/+ijn5XxWtKv97rPRYeju8CzQSBBboMPbBSyXph4OAQs2dH94ogsBEGdeqwEAv fV6SqEeVDz9xIHy6do7pVcwuJPDrZqTmEM5yCsUvZj8Yguhh9yN07qPb0e5UB/ku4jzvSS jzO2FsoRqBNMzFCCD283ima4P52Xz3kUrnbsdF9CJ7Xro2kyvTyg1gsbflfsr3Iq94D730 FrtROU2mJZQ9uCulcJn+2baOe0HaZKwlP9SQnypqlRoHc0fO4B7wKkUMZDvgvFKtqLkBuN ANVRfJJYsi8nSr5u2fkz8c7YMKfqKKNcO2/J7azo/Kxptub7hrlrRGTU+5rsow== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1670793846; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=cJwUHmpzx7WeCZ3CJLvuS6paiKQVR4F4/Ca4nPhyKNM=; b=G0csyTbSYtuAZbkqwHW2tNO37UEBmwxsRgiiw0r3AGeOPyegD7y35cOkf73ERweZ1ZNZsh 7X4Wm16AbsFJoxt6kOzz7bnt6+nUNs5DvUckRm9+d2OTFN1KFa2AnOyImkVdFz1omUMR9f Rc6mVeKR5ReHTHp0lUgrbSg8rPq9grChynz1iSqLkz448ACVrWFr9l8MHlJLDZXrXW1Zfk C8Jo3kSz7mpK3j38bHGAB/POMOOS67jeyX4XCv+JDrZWms8aCRcgcnIKjg0HZoARq9w8AI pd5YLnsCgXh4tiR72MtqGyPjVYshtU2DdN1h2W7CiYR8PVKsptkyEdi5PnQjGQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1670793846; a=rsa-sha256; cv=none; b=AxrTmP3R1vBT0QdDCq/Kz7SkTiXBU/CyzOpElYqH4yiICwT7gCojUq9GPY/503zrB1l/lY jEtePuzGzrWv7DVbXITbKm+hPkZN8e/fERb/qkYP78Hb3A7lTWaV//Odghu2CZf+guxako cuxq0YKwhmim2ECEdL22wsZUtOh++2i8BbakSsXU+22WA/HjnkhCoJ+DJ18gXlTv1XzPu0 xUMBmF/1icidqJnkmr6VpKegTZz9fnqAVm2EuagzQyBlw3HikmwFHY85Ew59YEI8LLE5yP BrwMD1tD2PanCB956B/A8dE4eOJ8DIKSnoYPmObQsFeXaVIPqAlG9a/LhuDwqw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4NVd6t5Sssz18fd; Sun, 11 Dec 2022 21:24:06 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 2BBLO6Nu099184; Sun, 11 Dec 2022 21:24:06 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 2BBLO6p4099183; Sun, 11 Dec 2022 21:24:06 GMT (envelope-from git) Date: Sun, 11 Dec 2022 21:24:06 GMT Message-Id: <202212112124.2BBLO6p4099183@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 03af9391b523 - main - biology/fastq-trim: Update to 0.1.2 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 03af9391b5230ff00e25ea1fee083aef3d7f82ad Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=03af9391b5230ff00e25ea1fee083aef3d7f82ad commit 03af9391b5230ff00e25ea1fee083aef3d7f82ad Author: Jason W. Bacon AuthorDate: 2022-12-11 21:23:01 +0000 Commit: Jason W. Bacon CommitDate: 2022-12-11 21:24:05 +0000 biology/fastq-trim: Update to 0.1.2 Minor enhancements, fixes for SunOS Changes: https://github.com/auerlab/fastq-trim/releases --- biology/fastq-trim/Makefile | 3 +-- biology/fastq-trim/distinfo | 6 +++--- biology/fastq-trim/pkg-descr | 8 ++++++-- 3 files changed, 10 insertions(+), 7 deletions(-) diff --git a/biology/fastq-trim/Makefile b/biology/fastq-trim/Makefile index d183a3c838ba..828e068b28c6 100644 --- a/biology/fastq-trim/Makefile +++ b/biology/fastq-trim/Makefile @@ -1,6 +1,5 @@ PORTNAME= fastq-trim -DISTVERSION= 0.1.1-4 -DISTVERSIONSUFFIX= -g7e3c5ff +DISTVERSION= 0.1.2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/fastq-trim/distinfo b/biology/fastq-trim/distinfo index e98d9c697d0d..2a1f9a93383f 100644 --- a/biology/fastq-trim/distinfo +++ b/biology/fastq-trim/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1647897438 -SHA256 (outpaddling-fastq-trim-0.1.1-4-g7e3c5ff_GH0.tar.gz) = c2dec668dd1946d62b3f7110d243ac9722af8730dbd3919c1e62e01428af3794 -SIZE (outpaddling-fastq-trim-0.1.1-4-g7e3c5ff_GH0.tar.gz) = 30070 +TIMESTAMP = 1670785537 +SHA256 (outpaddling-fastq-trim-0.1.2_GH0.tar.gz) = 9b265aa6cc410a20479ff60d7fd5aa02c9a89c57624290887df4b9129aa1a70c +SIZE (outpaddling-fastq-trim-0.1.2_GH0.tar.gz) = 29796 diff --git a/biology/fastq-trim/pkg-descr b/biology/fastq-trim/pkg-descr index 0a4ad2c041bd..c15f60867a0a 100644 --- a/biology/fastq-trim/pkg-descr +++ b/biology/fastq-trim/pkg-descr @@ -1,2 +1,6 @@ -Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA -reads prior to analyses such as RNA-Seq. +Fastq-trim is a lightening fast read trimming tool for QA of +DNA and RNA reads prior to analyses such as RNA-Seq. it runs +in a fraction of the time required by popular trimmers and uses +only a few megabytes of RAM, so it will run almost entirely in +cache. The design supports adding any number of alignment +functions, so it can be easily adapted to any trimming needs.