From nobody Wed Oct 13 18:58:43 2021 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 139781807880; Wed, 13 Oct 2021 18:58:44 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4HV1yq72CFz4hL5; Wed, 13 Oct 2021 18:58:43 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id D11DB2CFDF; Wed, 13 Oct 2021 18:58:43 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 19DIwh16034344; Wed, 13 Oct 2021 18:58:43 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 19DIwhPI034343; Wed, 13 Oct 2021 18:58:43 GMT (envelope-from git) Date: Wed, 13 Oct 2021 18:58:43 GMT Message-Id: <202110131858.19DIwhPI034343@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Antoine Brodin Subject: git: 6a226290f3c8 - main - biology/py-pybigwig: remove, duplicate of biology/py-bigwig List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: antoine X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 6a226290f3c82253f50151496168e5d1d1bb13c0 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by antoine: URL: https://cgit.FreeBSD.org/ports/commit/?id=6a226290f3c82253f50151496168e5d1d1bb13c0 commit 6a226290f3c82253f50151496168e5d1d1bb13c0 Author: Antoine Brodin AuthorDate: 2021-10-13 18:57:58 +0000 Commit: Antoine Brodin CommitDate: 2021-10-13 18:57:58 +0000 biology/py-pybigwig: remove, duplicate of biology/py-bigwig --- biology/Makefile | 1 - biology/py-pybigwig/Makefile | 22 ---------------------- biology/py-pybigwig/distinfo | 3 --- biology/py-pybigwig/files/patch-setup.py | 11 ----------- biology/py-pybigwig/pkg-descr | 5 ----- 5 files changed, 42 deletions(-) diff --git a/biology/Makefile b/biology/Makefile index 3ed28258459c..cb8f76a6ddb9 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -161,7 +161,6 @@ SUBDIR += py-orange3-single-cell SUBDIR += py-pandas-charm SUBDIR += py-py2bit - SUBDIR += py-pybigwig SUBDIR += py-pyfaidx SUBDIR += py-pysam SUBDIR += py-python-libsbml diff --git a/biology/py-pybigwig/Makefile b/biology/py-pybigwig/Makefile deleted file mode 100644 index 4ec67e50a3c3..000000000000 --- a/biology/py-pybigwig/Makefile +++ /dev/null @@ -1,22 +0,0 @@ -PORTNAME= pyBigWig -DISTVERSION= 0.3.18 -PORTREVISION= 1 -CATEGORIES= biology python -MASTER_SITES= CHEESESHOP -PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} - -MAINTAINER= jwb@FreeBSD.org -COMMENT= Python access to bigWig files using libBigWig - -LICENSE= MIT -LICENSE_FILE= ${WRKSRC}/LICENSE.txt - -LIB_DEPENDS= libcurl.so:ftp/curl - -USES= localbase python -USE_PYTHON= autoplist distutils - -post-install: - @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyBigWig.cpython-38.so - -.include diff --git a/biology/py-pybigwig/distinfo b/biology/py-pybigwig/distinfo deleted file mode 100644 index 35e26a9f88d0..000000000000 --- a/biology/py-pybigwig/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -TIMESTAMP = 1617288519 -SHA256 (pyBigWig-0.3.18.tar.gz) = 4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc -SIZE (pyBigWig-0.3.18.tar.gz) = 64834 diff --git a/biology/py-pybigwig/files/patch-setup.py b/biology/py-pybigwig/files/patch-setup.py deleted file mode 100644 index 30a4bc936ca3..000000000000 --- a/biology/py-pybigwig/files/patch-setup.py +++ /dev/null @@ -1,11 +0,0 @@ ---- setup.py.orig 2021-10-13 13:55:13 UTC -+++ setup.py -@@ -69,7 +69,7 @@ setup(name = 'pyBigWig', - url = "https://github.com/dpryan79/pyBigWig", - download_url = "https://github.com/dpryan79/pyBigWig/tarball/0.3.13", - keywords = ["bioinformatics", "bigWig", "bigBed"], -- classifier = ["Development Status :: 5 - Production/Stable", -+ classifiers = ["Development Status :: 5 - Production/Stable", - "Intended Audience :: Developers", - "License :: OSI Approved", - "Programming Language :: C", diff --git a/biology/py-pybigwig/pkg-descr b/biology/py-pybigwig/pkg-descr deleted file mode 100644 index 111f72f80af6..000000000000 --- a/biology/py-pybigwig/pkg-descr +++ /dev/null @@ -1,5 +0,0 @@ -py-bigwig is a python extension, written in C, for quick access to -bigBed files and access to and creation of bigWig files. This extension -uses libBigWig for local and remote file access. - -WWW: https://github.com/deeptools/pyBigWig