git: 904a889fd144 - main - biology/py-pybigwig: Python access to bigWig files using libBigWig

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=904a889fd144ce50db4d97a702861aea89fe2e94

commit 904a889fd144ce50db4d97a702861aea89fe2e94
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2021-10-13 13:03:21 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2021-10-13 13:03:21 +0000

    biology/py-pybigwig: Python access to bigWig files using libBigWig
    
    py-bigwig is a python extension, written in C, for quick access to
    bigBed files and access to and creation of bigWig files. This extension
    uses libBigWig for local and remote file access.
---
 biology/Makefile              |  1 +
 biology/py-pybigwig/Makefile  | 21 +++++++++++++++++++++
 biology/py-pybigwig/distinfo  |  3 +++
 biology/py-pybigwig/pkg-descr |  5 +++++
 4 files changed, 30 insertions(+)

diff --git a/biology/Makefile b/biology/Makefile
index 3f2fb1f06f13..35521b0b5f27 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -160,6 +160,7 @@
     SUBDIR += py-orange3-single-cell
     SUBDIR += py-pandas-charm
     SUBDIR += py-py2bit
+    SUBDIR += py-pybigwig
     SUBDIR += py-pyfaidx
     SUBDIR += py-pysam
     SUBDIR += py-python-libsbml
diff --git a/biology/py-pybigwig/Makefile b/biology/py-pybigwig/Makefile
new file mode 100644
index 000000000000..ab33b4650777
--- /dev/null
+++ b/biology/py-pybigwig/Makefile
@@ -0,0 +1,21 @@
+PORTNAME=	pyBigWig
+DISTVERSION=	0.3.18
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	jwb@FreeBSD.org
+COMMENT=	Python access to bigWig files using libBigWig
+
+LICENSE=	MIT
+LICENSE_FILE=	${WRKSRC}/LICENSE.txt
+
+LIB_DEPENDS=	libcurl.so:ftp/curl
+
+USES=		localbase python
+USE_PYTHON=	autoplist distutils
+
+post-install:
+	@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyBigWig.so
+
+.include <bsd.port.mk>
diff --git a/biology/py-pybigwig/distinfo b/biology/py-pybigwig/distinfo
new file mode 100644
index 000000000000..35e26a9f88d0
--- /dev/null
+++ b/biology/py-pybigwig/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1617288519
+SHA256 (pyBigWig-0.3.18.tar.gz) = 4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc
+SIZE (pyBigWig-0.3.18.tar.gz) = 64834
diff --git a/biology/py-pybigwig/pkg-descr b/biology/py-pybigwig/pkg-descr
new file mode 100644
index 000000000000..111f72f80af6
--- /dev/null
+++ b/biology/py-pybigwig/pkg-descr
@@ -0,0 +1,5 @@
+py-bigwig is a python extension, written in C, for quick access to
+bigBed files and access to and creation of bigWig files. This extension
+uses libBigWig for local and remote file access.
+
+WWW: https://github.com/deeptools/pyBigWig