git: d92344039b43 - main - biology/py-py2bit: Python interface for 2bit packed nucleotide files

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=d92344039b4350674d959be16d5a2cfe07f87172

commit d92344039b4350674d959be16d5a2cfe07f87172
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2021-10-13 12:53:09 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2021-10-13 12:53:53 +0000

    biology/py-py2bit: Python interface for 2bit packed nucleotide files
    
    py2bit is a python extension, written in C, for quick access to 2bit
    files for randomly accessible, packed nucleotide sequences. The
    extension uses lib2bit for file access.
---
 biology/Makefile            |  1 +
 biology/py-py2bit/Makefile  | 16 ++++++++++++++++
 biology/py-py2bit/distinfo  |  3 +++
 biology/py-py2bit/pkg-descr |  5 +++++
 4 files changed, 25 insertions(+)

diff --git a/biology/Makefile b/biology/Makefile
index c779368ef1d2..3f2fb1f06f13 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -159,6 +159,7 @@
     SUBDIR += py-orange3-bioinformatics
     SUBDIR += py-orange3-single-cell
     SUBDIR += py-pandas-charm
+    SUBDIR += py-py2bit
     SUBDIR += py-pyfaidx
     SUBDIR += py-pysam
     SUBDIR += py-python-libsbml
diff --git a/biology/py-py2bit/Makefile b/biology/py-py2bit/Makefile
new file mode 100644
index 000000000000..7295e91ed18f
--- /dev/null
+++ b/biology/py-py2bit/Makefile
@@ -0,0 +1,16 @@
+PORTNAME=	py2bit
+DISTVERSION=	0.3.0
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	jwb@FreeBSD.org
+COMMENT=	Python interface for 2bit packed nucleotide files
+
+LICENSE=	MIT
+LICENSE_FILE=	${WRKSRC}/LICENSE.txt
+
+USES=		python
+USE_PYTHON=	autoplist distutils
+
+.include <bsd.port.mk>
diff --git a/biology/py-py2bit/distinfo b/biology/py-py2bit/distinfo
new file mode 100644
index 000000000000..a797a50f82d2
--- /dev/null
+++ b/biology/py-py2bit/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1617287956
+SHA256 (py2bit-0.3.0.tar.gz) = 450555c40cba66957ac8c9a4b6afb625fb34c4bb41638de78c87661ff8b682ef
+SIZE (py2bit-0.3.0.tar.gz) = 16010
diff --git a/biology/py-py2bit/pkg-descr b/biology/py-py2bit/pkg-descr
new file mode 100644
index 000000000000..f6a726605c5e
--- /dev/null
+++ b/biology/py-py2bit/pkg-descr
@@ -0,0 +1,5 @@
+py2bit is a python extension, written in C, for quick access to 2bit
+files for randomly accessible, packed nucleotide sequences. The
+extension uses lib2bit for file access.
+
+WWW: https://github.com/deeptools/py2bit