From nobody Tue Dec 21 16:17:12 2021 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 255FB18EF5EC; Tue, 21 Dec 2021 16:17:13 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JJM6c5wFXz3w94; Tue, 21 Dec 2021 16:17:12 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id AB9734DB0; Tue, 21 Dec 2021 16:17:12 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 1BLGHCZk040745; Tue, 21 Dec 2021 16:17:12 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 1BLGHCOX040744; Tue, 21 Dec 2021 16:17:12 GMT (envelope-from git) Date: Tue, 21 Dec 2021 16:17:12 GMT Message-Id: <202112211617.1BLGHCOX040744@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 7a9f4b317a0a - main - bio-mocha: Build plugin against bcftools 1.14, the current port List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 7a9f4b317a0a8eecc36ef8877412eb697b937a60 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1640103432; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=NjUbTZlU9zi+e0QhdSwz3lz+BNV17Urdwu70bQ4Lb2Y=; b=fSYklEE9Y0vd/EW2pIT5j8bSallVile6IyDmspmIqrIvSW+7+uajZNXkfX8v/qGruvOnH5 s4DqAbMjc7CdAtcb2MBU0xgrXogPfW/BRyqFjgZg5FrIAxkue76ynCrq0s+n/zOeuCgJq3 SFA0DVZSJuuxTCQIx26MxIWwZi3e1r+e9iOR9gt62HHUSHmOZHF7StQ4hQbGhXQGYSVHRF tSr6r4IgNpEgoiRsGkkSkS0RtJvMPtESnG1TUllfH4aL/Ez7tZDEExbGofISSeQgdQJ1nL o6kUBDiPy/xnO8DyYLU8gW92bMRveGo0Us6EF89ldvY4RGjmfty1xWUsaIMikA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1640103432; a=rsa-sha256; cv=none; b=xdp3APAIV6MHe800UrfPZauC31lwjAAoWp6pmEZDL+paDumBeSFM/ypDxk/AfYpbNZ8+p0 mPQCFfluz+AQgUmb65KjjA+TZ0KuZ1gP/T4XprgMYVq5dQgtSHCf/DvyZqtrkkNpbCr7JV eIx7/eGIKauLz8iizej8tQGJJqvOqyRKXdFVtnJsyzvkDpSaADck7sNJqMm2Gb2o5cvwRT vocctCvZ+LKCVnHamnLIcMiyVTr+f+gKiobuYfkaSvYdT5XstbkLkpSTW9ptBJt0/rBQEY 2aY7tErO9P/OEPQIUlXw0YxE70RzcJPmNXw/RbXOeTbxAFCSEgU6+o/qHIYafQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=7a9f4b317a0a8eecc36ef8877412eb697b937a60 commit 7a9f4b317a0a8eecc36ef8877412eb697b937a60 Author: Jason W. Bacon AuthorDate: 2021-12-21 16:16:29 +0000 Commit: Jason W. Bacon CommitDate: 2021-12-21 16:17:11 +0000 bio-mocha: Build plugin against bcftools 1.14, the current port --- biology/bio-mocha/Makefile | 6 ++++-- biology/bio-mocha/distinfo | 6 +++--- 2 files changed, 7 insertions(+), 5 deletions(-) diff --git a/biology/bio-mocha/Makefile b/biology/bio-mocha/Makefile index a046d5fd95c5..ec134d0530bb 100644 --- a/biology/bio-mocha/Makefile +++ b/biology/bio-mocha/Makefile @@ -1,17 +1,18 @@ PORTNAME= bio-mocha DISTVERSION= 1.13 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= https://software.broadinstitute.org/software/mocha/ DISTFILES+= ${PORTNAME}_${DISTVERSION}-20211015.tar.gz MAINTAINER= jwb@FreeBSD.org -COMMENT= bcftools plugin for mosaic chromosomal alteration analysis +COMMENT= Bcftools plugin for mosaic chromosomal alteration analysis LICENSE= MIT LIB_DEPENDS= libhts.so:biology/htslib BUILD_DEPENDS= bash:shells/bash -RUN_DEPENDS= bcftools==${PORTVERSION}:biology/bcftools +RUN_DEPENDS= bcftools>=${PORTVERSION}:biology/bcftools USES= autoreconf gmake localbase perl5 python:env shebangfix USE_GITHUB= yes @@ -19,6 +20,7 @@ USE_PERL5= test GH_ACCOUNT= samtools GH_PROJECT= bcftools +GH_TAGNAME= 1.14 GNU_CONFIGURE= yes SHEBANG_FILES= misc/* test/test.pl diff --git a/biology/bio-mocha/distinfo b/biology/bio-mocha/distinfo index e67e570dfc93..ee4554ecbe66 100644 --- a/biology/bio-mocha/distinfo +++ b/biology/bio-mocha/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1638495618 +TIMESTAMP = 1640100283 SHA256 (bio-mocha_1.13-20211015.tar.gz) = e145bb48fea347202e16395ab7d78e7e7314749b8d472a2071f8074004cd63a5 SIZE (bio-mocha_1.13-20211015.tar.gz) = 73627 -SHA256 (samtools-bcftools-1.13_GH0.tar.gz) = 55fbc674ec69e243052e9fb6560eb43d06f45f210e1842ba4dbe33acb394e562 -SIZE (samtools-bcftools-1.13_GH0.tar.gz) = 3133637 +SHA256 (samtools-bcftools-1.13-1.14_GH0.tar.gz) = c9a814b1f0a13af19b45283f039d01b524e011d870ac95cd92e6907c3d1db6d1 +SIZE (samtools-bcftools-1.13-1.14_GH0.tar.gz) = 3326994