git: 301164a6eda7 - main - science/py-psims: Add py-psims 1.4.0

The branch main has been updated by sunpoet:

URL: https://cgit.FreeBSD.org/ports/commit/?id=301164a6eda75b4408e3a53f4c465ba4cb0965fd

commit 301164a6eda75b4408e3a53f4c465ba4cb0965fd
Author:     Po-Chuan Hsieh <sunpoet@FreeBSD.org>
AuthorDate: 2026-09-29 18:55:03 +0000
Commit:     Po-Chuan Hsieh <sunpoet@FreeBSD.org>
CommitDate: 2026-09-29 19:17:28 +0000

    science/py-psims: Add py-psims 1.4.0
    
    Prototype work for a unified API for writing Proteomics Standards Initiative
    standardized formats for mass spectrometry:
    1. mzML
    2. mzIdentML
    3. mzMLb
---
 science/Makefile           |  1 +
 science/py-psims/Makefile  | 27 +++++++++++++++++++++++++++
 science/py-psims/distinfo  |  3 +++
 science/py-psims/pkg-descr |  5 +++++
 4 files changed, 36 insertions(+)

diff --git a/science/Makefile b/science/Makefile
index e8640b8ba4b2..a35ac631d9c9 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -414,6 +414,7 @@
     SUBDIR += py-plumed
     SUBDIR += py-pnetcdf
     SUBDIR += py-probeinterface
+    SUBDIR += py-psims
     SUBDIR += py-pupynere
     SUBDIR += py-py3Dmol
     SUBDIR += py-pyaixi
diff --git a/science/py-psims/Makefile b/science/py-psims/Makefile
new file mode 100644
index 000000000000..2242a3a2857d
--- /dev/null
+++ b/science/py-psims/Makefile
@@ -0,0 +1,27 @@
+PORTNAME=	psims
+PORTVERSION=	1.4.0
+CATEGORIES=	science python
+MASTER_SITES=	PYPI
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	sunpoet@FreeBSD.org
+COMMENT=	Writers and controlled vocabulary manager for PSI-MS's mzML and mzIdentML standards
+WWW=		https://mobiusklein.github.io/psims/docs/build/html/ \
+		https://github.com/mobiusklein/psims
+
+LICENSE=	APACHE20
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR}
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}lxml>=0:devel/py-lxml@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}numpy>=0,1:math/py-numpy@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}six>=0:devel/py-six@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}sqlalchemy20>=0:databases/py-sqlalchemy20@${PY_FLAVOR}
+
+USES=		python
+USE_PYTHON=	autoplist concurrent pep517
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>
diff --git a/science/py-psims/distinfo b/science/py-psims/distinfo
new file mode 100644
index 000000000000..7d50e132dc1e
--- /dev/null
+++ b/science/py-psims/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1790435632
+SHA256 (psims-1.4.0.tar.gz) = ac7730c507864eb141877a700dd79e5fc7afc7da30998778b91c50e0f9f5e8e7
+SIZE (psims-1.4.0.tar.gz) = 23888972
diff --git a/science/py-psims/pkg-descr b/science/py-psims/pkg-descr
new file mode 100644
index 000000000000..349b9d9011b2
--- /dev/null
+++ b/science/py-psims/pkg-descr
@@ -0,0 +1,5 @@
+Prototype work for a unified API for writing Proteomics Standards Initiative
+standardized formats for mass spectrometry:
+1. mzML
+2. mzIdentML
+3. mzMLb