git: 6f260d6e70da - main - biology/gatk: update 4.6.2.0 → 4.7.0.0

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=6f260d6e70da6a49c868d2faaf65c914ded3c717

commit 6f260d6e70da6a49c868d2faaf65c914ded3c717
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2026-09-07 06:45:34 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2026-09-07 10:09:53 +0000

    biology/gatk: update 4.6.2.0 → 4.7.0.0
    
    ChangeLog: https://github.com/broadinstitute/gatk/releases/tag/4.7.0.0
---
 biology/gatk/Makefile |  6 +++---
 biology/gatk/distinfo | 10 +++++-----
 2 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile
index 428542024b3c..274b154c20a2 100644
--- a/biology/gatk/Makefile
+++ b/biology/gatk/Makefile
@@ -1,6 +1,5 @@
 PORTNAME=	gatk
-DISTVERSION=	4.6.2.0
-PORTREVISION=	2
+DISTVERSION=	4.7.0.0
 CATEGORIES=	biology java
 EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
 
@@ -121,6 +120,7 @@ do-test: # tests require WITH_LARGE_FILES=ON, and they use a lot of disk space
 
 # tests as of 4.6.1.0: 288552 tests, 301 failures, 37 ignored, 1h55m5.63s duration, 99% successful, see https://github.com/broadinstitute/gatk/issues/8940
 # tests as of 4.6.2.0: 288719 tests completed, 300 failed, 37 skipped
-# see https://github.com/broadinstitute/gatk/issues/8939: Tests fail to find libgkl libraries in /usr/local/lib
+# tests as of 4.7.0.0: 288832 tests, 288495 successes, 300 failures, 37 skipped
+# see https://github.com/broadinstitute/gatk/issues/8939: Tests fail to find libgkl libraries in /usr/local/lib (~300 tests fail like this, the upstream is not responsive)
 
 .include <bsd.port.mk>
diff --git a/biology/gatk/distinfo b/biology/gatk/distinfo
index 42fbad5e8a91..59424e1570ae 100644
--- a/biology/gatk/distinfo
+++ b/biology/gatk/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1756227460
-SHA256 (gatk-4.6.2.0-deps.tar.gz) = c956ec3b6a209b4eaf9c20cb312635498b360aa372f824b33d392aa0ac594a77
-SIZE (gatk-4.6.2.0-deps.tar.gz) = 903933113
-SHA256 (broadinstitute-gatk-4.6.2.0_GH0.tar.gz) = c76b61a549f49004a54ae86e88cd8b7a180a3bd2e4a56b1c9185f30971c79866
-SIZE (broadinstitute-gatk-4.6.2.0_GH0.tar.gz) = 4318674606
+TIMESTAMP = 1788741914
+SHA256 (gatk-4.7.0.0-deps.tar.gz) = 12875aab8f311d5e077f51b2ea12e2c38d3066b35ea4a0de26bf0fa294c1e74e
+SIZE (gatk-4.7.0.0-deps.tar.gz) = 907471126
+SHA256 (broadinstitute-gatk-4.7.0.0_GH0.tar.gz) = 9d42bfe74f7f5380eb2689a873ea00d27b16891b0cb7fd9deb10e1cfae553ec5
+SIZE (broadinstitute-gatk-4.7.0.0_GH0.tar.gz) = 4318943130