git: 3df34657df9a - main - science/libcifpp: update 7.0.8 → 10.0.0
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Date: Sun, 22 Mar 2026 05:38:17 UTC
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=3df34657df9aefcc83c8b196a191d6a9905dad6a
commit 3df34657df9aefcc83c8b196a191d6a9905dad6a
Author: Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2026-03-22 05:07:48 +0000
Commit: Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2026-03-22 05:38:12 +0000
science/libcifpp: update 7.0.8 → 10.0.0
---
science/libcifpp/Makefile | 12 ++++---
science/libcifpp/distinfo | 10 +++---
science/libcifpp/files/patch-CMakeLists.txt | 52 ++++++++++++++---------------
science/libcifpp/pkg-plist | 10 ++----
4 files changed, 41 insertions(+), 43 deletions(-)
diff --git a/science/libcifpp/Makefile b/science/libcifpp/Makefile
index 96e945f88975..694f22f97de5 100644
--- a/science/libcifpp/Makefile
+++ b/science/libcifpp/Makefile
@@ -1,7 +1,6 @@
PORTNAME= libcifpp
DISTVERSIONPREFIX= v
-DISTVERSION= 7.0.8
-PORTREVISION= 3
+DISTVERSION= 10.0.0
CATEGORIES= science
MASTER_SITES= https://files.wwpdb.org/pub/pdb/data/monomers/:components
DISTFILES= components.cif.gz:components
@@ -15,11 +14,13 @@ WWW= https://github.com/PDB-REDO/libcifpp
LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
-BUILD_DEPENDS= catch>0:devel/catch
-LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs
+BUILD_DEPENDS= catch>0:devel/catch \
+ fast_float>0:math/fast_float
+LIB_DEPENDS= libboost_iostreams.so:devel/boost-libs \
+ libpcre2-8.so:devel/pcre2
RUN_DEPENDS= bash:shells/bash
-USES= cmake:testing compiler:c++20-lang eigen:3 shebangfix
+USES= cmake:testing compiler:c++20-lang eigen:3 pkgconfig shebangfix sqlite
USE_LDCONFIG= yes
USE_GITHUB= yes
@@ -28,6 +29,7 @@ GH_ACCOUNT= PDB-REDO
SHEBANG_FILES= tools/update-libcifpp-data.in
CMAKE_ON= BUILD_SHARED_LIBS
+CMAKE_OFF= BUILD_TESTING
CMAKE_ARGS= -DDISTDIR_FULL=${DISTDIR}/${DIST_SUBDIR}
CMAKE_TESTING_ON= ENABLE_TESTING
diff --git a/science/libcifpp/distinfo b/science/libcifpp/distinfo
index 36ccc806dc44..6c41c66255c3 100644
--- a/science/libcifpp/distinfo
+++ b/science/libcifpp/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1736722754
-SHA256 (libcifpp-7.0.8/components.cif.gz) = 6c5174e7fdc80bdba9ebba72ae789ad5ca9f47b6885d5f6936c2656eff351847
-SIZE (libcifpp-7.0.8/components.cif.gz) = 104745353
-SHA256 (libcifpp-7.0.8/PDB-REDO-libcifpp-v7.0.8_GH0.tar.gz) = 2297e6649a4f71caf9da5f1d97f59512e7324bb62083bb5b08eb00c1c0385cb3
-SIZE (libcifpp-7.0.8/PDB-REDO-libcifpp-v7.0.8_GH0.tar.gz) = 2648244
+TIMESTAMP = 1774152097
+SHA256 (libcifpp-10.0.0/components.cif.gz) = dd4396e48d09d57a5840589517259208c9fb777c303902c40d44459685eec97e
+SIZE (libcifpp-10.0.0/components.cif.gz) = 114892799
+SHA256 (libcifpp-10.0.0/PDB-REDO-libcifpp-v10.0.0_GH0.tar.gz) = f556fcf5fd4a5728c1fd6c67976cdeed72bfd9b80cce6a27356de228c3cd1530
+SIZE (libcifpp-10.0.0/PDB-REDO-libcifpp-v10.0.0_GH0.tar.gz) = 2798521
diff --git a/science/libcifpp/files/patch-CMakeLists.txt b/science/libcifpp/files/patch-CMakeLists.txt
index ffc6a39a4f00..38fd02027775 100644
--- a/science/libcifpp/files/patch-CMakeLists.txt
+++ b/science/libcifpp/files/patch-CMakeLists.txt
@@ -1,29 +1,29 @@
---- CMakeLists.txt.orig 2024-09-13 05:26:00 UTC
+--- CMakeLists.txt.orig 2026-02-17 12:50:08 UTC
+++ CMakeLists.txt
-@@ -395,7 +395,7 @@ if(CIFPP_DOWNLOAD_CCD)
+@@ -400,7 +400,7 @@ if(CIFPP_DOWNLOAD_CCD)
- if(WIN32 OR GUNZIP STREQUAL "GUNZIP-NOTFOUND")
- file(
-- DOWNLOAD https://files.wwpdb.org/pub/pdb/data/monomers/components.cif
-+ DOWNLOAD file://${DISTDIR_FULL}/components.cif.gz
- ${COMPONENTS_CIF}
- SHOW_PROGRESS
- STATUS CCD_FETCH_STATUS)
-@@ -403,7 +403,7 @@ if(CIFPP_DOWNLOAD_CCD)
- if(NOT EXISTS "${COMPONENTS_CIF}.gz")
- file(
- DOWNLOAD
-- https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
-+ file://${DISTDIR_FULL}/components.cif.gz
- ${COMPONENTS_CIF}.gz
- SHOW_PROGRESS
- STATUS CCD_FETCH_STATUS)
-@@ -556,7 +556,7 @@ if(CIFPP_INSTALL_UPDATE_SCRIPT)
+ if(WIN32 OR GUNZIP STREQUAL "GUNZIP-NOTFOUND")
+ file(
+- DOWNLOAD https://files.wwpdb.org/pub/pdb/data/monomers/components.cif
++ DOWNLOAD file://${DISTDIR_FULL}/components.cif.gz
+ ${COMPONENTS_CIF}
+ SHOW_PROGRESS
+ STATUS CCD_FETCH_STATUS)
+@@ -408,7 +408,7 @@ if(CIFPP_DOWNLOAD_CCD)
+ if(NOT EXISTS "${COMPONENTS_CIF}.gz")
+ file(
+ DOWNLOAD
+- https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
++ file://${DISTDIR_FULL}/components.cif.gz
+ ${COMPONENTS_CIF}.gz
+ SHOW_PROGRESS
+ STATUS CCD_FETCH_STATUS)
+@@ -562,7 +562,7 @@ if(CIFPP_INSTALL_UPDATE_SCRIPT)
- # a config file, to make it complete
- # install(DIRECTORY DESTINATION "${CMAKE_INSTALL_LOCALSTATEDIR}/libcifpp")
-- if(NOT EXISTS "${CMAKE_INSTALL_SYSCONFDIR}/libcifpp.conf")
-+ if(TRUE OR NOT EXISTS "${CMAKE_INSTALL_SYSCONFDIR}/libcifpp.conf")
- file(
- WRITE ${CMAKE_CURRENT_BINARY_DIR}/libcifpp.conf
- [[# Uncomment the next line to enable automatic updates
+ # a config file, to make it complete
+ # install(DIRECTORY DESTINATION "${CMAKE_INSTALL_LOCALSTATEDIR}/libcifpp")
+- if(NOT EXISTS "${CMAKE_INSTALL_SYSCONFDIR}/libcifpp.conf")
++ if(TRUE OR NOT EXISTS "${CMAKE_INSTALL_SYSCONFDIR}/libcifpp.conf")
+ file(
+ WRITE ${CMAKE_CURRENT_BINARY_DIR}/libcifpp.conf
+ [[# Uncomment the next line to enable automatic updates
diff --git a/science/libcifpp/pkg-plist b/science/libcifpp/pkg-plist
index 7cc58395cd24..7a8f68736173 100644
--- a/science/libcifpp/pkg-plist
+++ b/science/libcifpp/pkg-plist
@@ -5,12 +5,12 @@ include/cif++/atom_type.hpp
include/cif++/category.hpp
include/cif++/compound.hpp
include/cif++/condition.hpp
+include/cif++/cql.hpp
include/cif++/datablock.hpp
include/cif++/dictionary_parser.hpp
include/cif++/exports.hpp
include/cif++/file.hpp
include/cif++/format.hpp
-include/cif++/forward_decl.hpp
include/cif++/gzio.hpp
include/cif++/item.hpp
include/cif++/iterator.hpp
@@ -18,10 +18,6 @@ include/cif++/matrix.hpp
include/cif++/model.hpp
include/cif++/parser.hpp
include/cif++/pdb.hpp
-include/cif++/pdb/cif2pdb.hpp
-include/cif++/pdb/io.hpp
-include/cif++/pdb/pdb2cif.hpp
-include/cif++/pdb/tls.hpp
include/cif++/point.hpp
include/cif++/row.hpp
include/cif++/symmetry.hpp
@@ -33,8 +29,8 @@ lib/cmake/cifpp/cifpp-config.cmake
lib/cmake/cifpp/cifpp-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/cifpp/cifpp-targets.cmake
lib/libcifpp.so
-lib/libcifpp.so.7.0
-lib/libcifpp.so.7.0.8
+lib/libcifpp.so.10.0
+lib/libcifpp.so.10.0.0
%%DATADIR%%/components.cif
%%DATADIR%%/mmcif_ddl.dic
%%DATADIR%%/mmcif_ma.dic