git: 5072fe56dc1d - main - science/libminc: core library and API of the MINC toolkit, split from science/minc2
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Date: Wed, 24 Jun 2026 15:31:52 UTC
The branch main has been updated by thierry:
URL: https://cgit.FreeBSD.org/ports/commit/?id=5072fe56dc1dff261ea384af29b4e59a991af1da
commit 5072fe56dc1dff261ea384af29b4e59a991af1da
Author: Thierry Thomas <thierry@FreeBSD.org>
AuthorDate: 2026-06-24 15:29:32 +0000
Commit: Thierry Thomas <thierry@FreeBSD.org>
CommitDate: 2026-06-24 15:31:48 +0000
science/libminc: core library and API of the MINC toolkit, split from science/minc2
---
MOVED | 1 +
science/Makefile | 3 +-
science/libminc/Makefile | 27 +++++
science/libminc/distinfo | 3 +
science/libminc/files/patch-CMakeLists.txt | 10 ++
science/libminc/files/patch-LIBMINCConfig.cmake.in | 10 ++
science/libminc/pkg-descr | 7 ++
science/libminc/pkg-plist | 50 +++++++++
science/minc2/Makefile | 44 --------
science/minc2/distinfo | 2 -
science/minc2/files/patch-Makefile.am | 53 ---------
.../patch-conversion_minctoecat_ecat__write.c | 12 --
.../patch-conversion_minctoecat_ecat__write.h | 14 ---
science/minc2/files/patch-netcdf | 42 -------
.../minc2/files/patch-progs_mincdump_mincdump.c | 51 ---------
.../minc2/files/patch-progs_mincdump_mincdump.h | 11 --
science/minc2/files/patch-progs_mincdump_vardata.c | 11 --
science/minc2/files/patch-progs_mincpik_mincpik.in | 38 -------
science/minc2/pkg-descr | 2 -
science/minc2/pkg-plist | 124 ---------------------
20 files changed, 110 insertions(+), 405 deletions(-)
diff --git a/MOVED b/MOVED
index 21c4126d3db9..10862c0df551 100644
--- a/MOVED
+++ b/MOVED
@@ -5376,3 +5376,4 @@ sysutils/signon-plugin-oauth2@qt5||2026-06-22|Unflavorize, remove Qt5 flavor
sysutils/signon-plugin-oauth2@qt6|sysutils/signon-plugin-oauth2|2026-06-22|Unflavorize
net-im/libaccounts-qt@qt5||2026-06-22|Unflavorize, remove Qt5 flavor
net-im/libaccounts-qt@qt6|net-im/libaccounts-qt|2026-06-22|Unflavorize
+science/minc2|science/minc-tools|2026-06-24|Split into science/minc-tools and science/libminc
diff --git a/science/Makefile b/science/Makefile
index a7f46b4fc331..e17b968055c2 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -154,6 +154,7 @@
SUBDIR += libkml
SUBDIR += liblinear
SUBDIR += libmbd
+ SUBDIR += libminc
SUBDIR += libmsym
SUBDIR += libnegf
SUBDIR += liboglappth
@@ -184,7 +185,7 @@
SUBDIR += medit
SUBDIR += meep
SUBDIR += metaphysicl
- SUBDIR += minc2
+ SUBDIR += minc-tools
SUBDIR += mmdb2
SUBDIR += mmg
SUBDIR += mmtf-cpp
diff --git a/science/libminc/Makefile b/science/libminc/Makefile
new file mode 100644
index 000000000000..25c8d5332f0a
--- /dev/null
+++ b/science/libminc/Makefile
@@ -0,0 +1,27 @@
+PORTNAME= libminc
+PORTVERSION= 2.5.0
+DISTVERSIONPREFIX= release-
+CATEGORIES= science biology
+
+MAINTAINER= ports@FreeBSD.org
+COMMENT= Core library and API of the MINC toolkit
+WWW= https://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
+
+LICENSE= MIT
+LICENSE_FILE= ${WRKSRC}/COPYING
+
+BUILD_DEPENDS= nifticlib>0:science/nifticlib
+LIB_DEPENDS= libhdf5.so:science/hdf5 \
+ libnetcdf.so:science/netcdf
+
+USES= cmake:testing localbase
+CMAKE_ON= LIBMINC_BUILD_SHARED_LIBS \
+ LIBMINC_MINC1_SUPPORT \
+ LIBMINC_USE_NIFTI LIBMINC_USE_SYSTEM_NIFTI
+
+USE_GITHUB= yes
+GH_ACCOUNT= BIC-MNI
+
+USE_LDCONFIG= yes
+
+.include <bsd.port.mk>
diff --git a/science/libminc/distinfo b/science/libminc/distinfo
new file mode 100644
index 000000000000..fc2878cc0752
--- /dev/null
+++ b/science/libminc/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1782248330
+SHA256 (BIC-MNI-libminc-release-2.5.0_GH0.tar.gz) = 57d807e86a353a93024a8849f5e21e2abea4f09f0be934e1f538bdc2b02f8885
+SIZE (BIC-MNI-libminc-release-2.5.0_GH0.tar.gz) = 823875
diff --git a/science/libminc/files/patch-CMakeLists.txt b/science/libminc/files/patch-CMakeLists.txt
new file mode 100644
index 000000000000..e861050e9cd1
--- /dev/null
+++ b/science/libminc/files/patch-CMakeLists.txt
@@ -0,0 +1,10 @@
+--- CMakeLists.txt.orig 2026-04-24 04:00:26 UTC
++++ CMakeLists.txt
+@@ -81,7 +81,6 @@ if(NOT LIBMINC_EXTERNALLY_CONFIGURED)
+
+ # external packages
+ find_package(ZLIB REQUIRED)
+- set(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON)
+ find_package(HDF5 REQUIRED COMPONENTS C )
+
+ if(LIBMINC_USE_NIFTI)
diff --git a/science/libminc/files/patch-LIBMINCConfig.cmake.in b/science/libminc/files/patch-LIBMINCConfig.cmake.in
new file mode 100644
index 000000000000..b61d87f7b8b8
--- /dev/null
+++ b/science/libminc/files/patch-LIBMINCConfig.cmake.in
@@ -0,0 +1,10 @@
+--- LIBMINCConfig.cmake.in.orig 2026-04-24 04:00:26 UTC
++++ LIBMINCConfig.cmake.in
+@@ -33,7 +33,6 @@ find_dependency(ZLIB REQUIRED)
+ # ----- Resolve transitive dependencies -----
+ find_dependency(ZLIB REQUIRED)
+
+-set(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON)
+ # Provide hints so the system FindHDF5 can find the same HDF5 we were built with
+ # (especially important on Debian/Ubuntu where the serial variant lives in
+ # non-standard paths like /usr/include/hdf5/serial)
diff --git a/science/libminc/pkg-descr b/science/libminc/pkg-descr
new file mode 100644
index 000000000000..61c88270b807
--- /dev/null
+++ b/science/libminc/pkg-descr
@@ -0,0 +1,7 @@
+MINC - Medical Image NetCDF or MINC isn't netCDF.
+
+The MINC file format is a highly flexible medical image file format built on the
+HDF5 generalized data format.
+
+Note: previously, this port was science/mint2, but it is now split into two
+parts: libminc and minc-tools.
diff --git a/science/libminc/pkg-plist b/science/libminc/pkg-plist
new file mode 100644
index 000000000000..41d940fa80d4
--- /dev/null
+++ b/science/libminc/pkg-plist
@@ -0,0 +1,50 @@
+include/ParseArgv.h
+include/minc.h
+include/minc2.h
+include/minc2_api.h
+include/minc2_defs.h
+include/minc2_error.h
+include/minc2_structs.h
+include/minc_1_rw.h
+include/minc_1_simple.h
+include/minc_1_simple_rw.h
+include/minc_common_defs.h
+include/minc_compat.h
+include/minc_config.h
+include/minc_error.h
+include/minc_format_convert.h
+include/minc_io_4d_volume.h
+include/minc_io_exceptions.h
+include/minc_io_fixed_vector.h
+include/minc_io_simple_volume.h
+include/minc_simple.h
+include/nd_loop.h
+include/read_file_names.h
+include/restructure.h
+include/time_stamp.h
+include/volume_io.h
+include/volume_io/alloc.h
+include/volume_io/arrays.h
+include/volume_io/basic.h
+include/volume_io/def_math.h
+include/volume_io/files.h
+include/volume_io/geom_structs.h
+include/volume_io/geometry.h
+include/volume_io/multidim.h
+include/volume_io/progress.h
+include/volume_io/string_funcs.h
+include/volume_io/system_dependent.h
+include/volume_io/transforms.h
+include/volume_io/vol_io_prototypes.h
+include/volume_io/volume.h
+include/volume_io/volume_cache.h
+include/voxel_loop.h
+lib/cmake/FindNETCDF.cmake
+lib/cmake/LIBMINC-targets-%%CMAKE_BUILD_TYPE%%.cmake
+lib/cmake/LIBMINC-targets.cmake
+lib/cmake/LIBMINCConfig.cmake
+lib/cmake/UseLIBMINC.cmake
+lib/libminc2.so
+lib/libminc2.so.5.3.0
+lib/libminc_io.so
+lib/libminc_io.so.5.3.0
diff --git a/science/minc2/Makefile b/science/minc2/Makefile
deleted file mode 100644
index 009a3b4461f1..000000000000
--- a/science/minc2/Makefile
+++ /dev/null
@@ -1,44 +0,0 @@
-PORTNAME= minc
-PORTVERSION= 2.2.00
-DISTVERSIONPREFIX= release-
-PORTREVISION= 15
-PORTEPOCH= 1
-CATEGORIES= science biology
-PKGNAMESUFFIX= 2
-
-MAINTAINER= ports@FreeBSD.org
-COMMENT= Medical Imaging NetCDF
-WWW= https://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
-
-LICENSE= MIT
-LICENSE_FILE= ${WRKSRC}/COPYING
-
-LIB_DEPENDS= libhdf5.so:science/hdf5 \
- libnetcdf.so:science/netcdf
-RUN_DEPENDS= bash:shells/bash
-
-USE_GITHUB= yes
-GH_ACCOUNT= BIC-MNI
-
-MAKE_JOBS_UNSAFE= yes
-
-USES= autoreconf bison gmake libtool perl5 shebangfix
-SHEBANG_FILES= progs/mincview/mincview
-GNU_CONFIGURE= yes
-GNU_CONFIGURE_MANPREFIX=${PREFIX}/share
-CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes
-INSTALL_TARGET= install-strip
-USE_LDCONFIG= yes
-
-CFLAGS+= -Wno-error=return-type
-CPPFLAGS+= -I${LOCALBASE}/include
-LDFLAGS+= -L${LOCALBASE}/lib
-
-CONFLICTS= minc-1* zh-tk
-
-pre-patch:
- @${RM} ${WRKSRC}/ac_config_aux/*
- @${RM} ${WRKSRC}/progs/minccalc/gram.[ch]
- @${RM} ${WRKSRC}/progs/mincgen/ncgentab.[ch]
-
-.include <bsd.port.mk>
diff --git a/science/minc2/distinfo b/science/minc2/distinfo
deleted file mode 100644
index e55a2231a484..000000000000
--- a/science/minc2/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (BIC-MNI-minc-release-2.2.00_GH0.tar.gz) = 61789f1a52ce646c6253c38a75d3bb06a04f60f059f8efb6935308f0e7de999f
-SIZE (BIC-MNI-minc-release-2.2.00_GH0.tar.gz) = 3906741
diff --git a/science/minc2/files/patch-Makefile.am b/science/minc2/files/patch-Makefile.am
deleted file mode 100644
index b6f53bf7c248..000000000000
--- a/science/minc2/files/patch-Makefile.am
+++ /dev/null
@@ -1,53 +0,0 @@
---- Makefile.am.orig 2012-09-24 17:35:36 UTC
-+++ Makefile.am
-@@ -274,28 +274,28 @@ m4_files = \
- m4/smr_WITH_BUILD_PATH.m4
-
- ezMINC_files = \
-- ezminc/examples/volume_msq_dist.cpp
-- ezminc/examples/CMakeLists.txt
-- ezminc/examples/fuzzy_volume_similarity.cpp
-- ezminc/examples/trilinear_resample.cpp
-- ezminc/examples/volume_avg.cpp
-- ezminc/examples/volume_gtc_similarity.cpp
-- ezminc/examples/volume_similarity.cpp
-- ezminc/minc_1_simple_rw.cpp
-- ezminc/minc_1_simple_rw.h
-- ezminc/minc_io_4d_volume.h
-- ezminc/minc_io_fixed_vector.h
-- ezminc/minc_io_simple_volume.h
-- ezminc/tests/minc_rw_test2.cpp
-- ezminc/tests/minc_rw_test_4d.cpp
-- ezminc/tests/minc_rw_test_simple.cpp
-- ezminc/tests/CMakeLists.txt
-- ezminc/tests/ezminc_rw_test.cpp
-- ezminc/tests/ezminc_stats.cpp
-- ezminc/minc_1_simple.h
-- ezminc/CMakeLists.txt
-- ezminc/minc_1_rw.cpp
-- ezminc/minc_1_rw.h
-+ ezminc/examples/volume_msq_dist.cpp \
-+ ezminc/examples/CMakeLists.txt \
-+ ezminc/examples/fuzzy_volume_similarity.cpp \
-+ ezminc/examples/trilinear_resample.cpp \
-+ ezminc/examples/volume_avg.cpp \
-+ ezminc/examples/volume_gtc_similarity.cpp \
-+ ezminc/examples/volume_similarity.cpp \
-+ ezminc/minc_1_simple_rw.cpp \
-+ ezminc/minc_1_simple_rw.h \
-+ ezminc/minc_io_4d_volume.h \
-+ ezminc/minc_io_fixed_vector.h \
-+ ezminc/minc_io_simple_volume.h \
-+ ezminc/tests/minc_rw_test2.cpp \
-+ ezminc/tests/minc_rw_test_4d.cpp \
-+ ezminc/tests/minc_rw_test_simple.cpp \
-+ ezminc/tests/CMakeLists.txt \
-+ ezminc/tests/ezminc_rw_test.cpp \
-+ ezminc/tests/ezminc_stats.cpp \
-+ ezminc/minc_1_simple.h \
-+ ezminc/CMakeLists.txt \
-+ ezminc/minc_1_rw.cpp \
-+ ezminc/minc_1_rw.h \
- ezminc/minc_io_exceptions.h
-
- voxeltoworld_SOURCES = progs/coordinates/voxeltoworld.c
diff --git a/science/minc2/files/patch-conversion_minctoecat_ecat__write.c b/science/minc2/files/patch-conversion_minctoecat_ecat__write.c
deleted file mode 100644
index 4369323f90d8..000000000000
--- a/science/minc2/files/patch-conversion_minctoecat_ecat__write.c
+++ /dev/null
@@ -1,12 +0,0 @@
---- conversion/minctoecat/ecat_write.c.orig 2023-04-11 00:36:34 UTC
-+++ conversion/minctoecat/ecat_write.c
-@@ -11,6 +11,9 @@
- #define ERROR -1
- #define V7 70
-
-+MatrixErrorCode matrix_errno;
-+
-+char matrix_errtxt[132];
-
- char* dstypecode[NumDataSetTypes] =
- { "u","s","i","a","n","pm","v8","v","p8","p","i8","S","S8","N", "FS"};
diff --git a/science/minc2/files/patch-conversion_minctoecat_ecat__write.h b/science/minc2/files/patch-conversion_minctoecat_ecat__write.h
deleted file mode 100644
index 902eafc23a84..000000000000
--- a/science/minc2/files/patch-conversion_minctoecat_ecat__write.h
+++ /dev/null
@@ -1,14 +0,0 @@
---- conversion/minctoecat/ecat_write.h.orig 2023-04-11 00:36:27 UTC
-+++ conversion/minctoecat/ecat_write.h
-@@ -39,9 +39,9 @@ typedef enum {
- BitData
- } MatrixDataType;
-
--MatrixErrorCode matrix_errno;
-+extern MatrixErrorCode matrix_errno;
-
--char matrix_errtxt[132];
-+extern char matrix_errtxt[132];
-
- typedef struct XMAIN_HEAD {
- char magic_number[14];
diff --git a/science/minc2/files/patch-netcdf b/science/minc2/files/patch-netcdf
deleted file mode 100644
index 139ba5217a0c..000000000000
--- a/science/minc2/files/patch-netcdf
+++ /dev/null
@@ -1,42 +0,0 @@
---- progs/mincdump/mincdump.c.orig 2012-09-24 17:35:36 UTC
-+++ progs/mincdump/mincdump.c
-@@ -494,17 +494,17 @@ do_ncdump(char *path, struct fspec* specp)
- /* get _FillValue attribute */
- old_nc_opts = ncopts;
- ncopts = 0;
-- nc_status = ncattinq(ncid,varid,_FillValue,&att.type,&att.len);
-+ nc_status = ncattinq(ncid,varid,NC_FillValue,&att.type,&att.len);
- ncopts = old_nc_opts;
- if(nc_status == NC_NOERR &&
- att.type == var.type && att.len == 1) {
- if(var.type == NC_CHAR) {
- char fillc;
-- ncattget(ncid, varid, _FillValue, &fillc );
-+ ncattget(ncid, varid, NC_FillValue, &fillc );
- var.fillval = fillc;
- }
- else {
-- ncattget(ncid, varid, _FillValue, &var.fillval);
-+ ncattget(ncid, varid, NC_FillValue, &var.fillval);
- }
- } else {
- switch (var.type) {
---- progs/mincgen/ncgentab.y.orig 2012-09-24 17:35:36 UTC
-+++ progs/mincgen/ncgentab.y
-@@ -288,14 +288,14 @@ attdecl: att
- /* shrink space down to what was really needed */
- att_space = erealloc(att_space, valnum*nctypesize(valtype));
- atts[natts].val = att_space;
-- if (STREQ(atts[natts].name, _FillValue) &&
-+ if (STREQ(atts[natts].name, NC_FillValue) &&
- atts[natts].var != NC_GLOBAL) {
- nc_putfill(atts[natts].type,
- atts[natts].val,
- &vars[atts[natts].var].fill_value);
- if(atts[natts].type != vars[atts[natts].var].type) {
- derror("variable %s: %s type mismatch",
-- vars[atts[natts].var].name, _FillValue);
-+ vars[atts[natts].var].name, NC_FillValue);
- }
- }
- natts++;
diff --git a/science/minc2/files/patch-progs_mincdump_mincdump.c b/science/minc2/files/patch-progs_mincdump_mincdump.c
deleted file mode 100644
index dd09a0708d57..000000000000
--- a/science/minc2/files/patch-progs_mincdump_mincdump.c
+++ /dev/null
@@ -1,51 +0,0 @@
---- progs/mincdump/mincdump.c.orig 2012-09-24 17:35:36 UTC
-+++ progs/mincdump/mincdump.c
-@@ -553,7 +553,7 @@ do_ncdump(char *path, struct fspec* spec
- static void
- set_brief(struct fspec * fspecp, char *key, char *optarg)
- {
-- fspecp->brief_data_cmnts = true;
-+ fspecp->brief_data_cmnts = my_true;
- switch (tolower(optarg[0])) {
- case 'c':
- fspecp->data_lang = LANG_C;
-@@ -569,7 +569,7 @@ set_brief(struct fspec * fspecp, char *k
- static void
- set_full(struct fspec * fspecp, char *key, char *optarg)
- {
-- fspecp->full_data_cmnts = true;
-+ fspecp->full_data_cmnts = my_true;
- switch (tolower(optarg[0])) {
- case 'c':
- fspecp->data_lang = LANG_C;
-@@ -688,10 +688,10 @@ main(int argc, char *argv[])
- static struct fspec fspec = /* defaults, overridden on command line */
- {
- 0, /* construct netcdf name from file name */
-- false, /* print header info only, no data? */
-- false, /* just print coord vars? */
-- false, /* brief comments in data section? */
-- false, /* full annotations in data section? */
-+ my_false, /* print header info only, no data? */
-+ my_false, /* just print coord vars? */
-+ my_false, /* brief comments in data section? */
-+ my_false, /* full annotations in data section? */
- LANG_C, /* language conventions for indices */
- 0, /* if -v specified, number of variables */
- 0 /* if -v specified, list of variable names */
-@@ -701,13 +701,13 @@ main(int argc, char *argv[])
- static ArgvInfo argTable[] = {
- {"-b", ARGV_FUNC, (char *) set_brief, (char *) &fspec,
- "Brief annotations for C or Fortran indices in data" },
-- {"-c", ARGV_CONSTANT, (char *) true, (char *) &fspec.coord_vals,
-+ {"-c", ARGV_CONSTANT, (char *) my_true, (char *) &fspec.coord_vals,
- "Coordinate variable data and header information" },
- {"-d", ARGV_FUNC, (char *) set_sigdigs, (char *) NULL,
- "Obsolete option for setting significant digits" },
- {"-f", ARGV_FUNC, (char *) set_full, (char *) &fspec,
- "Full annotations for C or Fortran indices in data" },
-- {"-h", ARGV_CONSTANT, (char *) true, (char *) &fspec.header_only,
-+ {"-h", ARGV_CONSTANT, (char *) my_true, (char *) &fspec.header_only,
- "Header information only, no data" },
- {"-l", ARGV_INT, (char *) 1, (char *) &max_len,
- "Line length maximum in data section (default 80)" },
diff --git a/science/minc2/files/patch-progs_mincdump_mincdump.h b/science/minc2/files/patch-progs_mincdump_mincdump.h
deleted file mode 100644
index ee9704df9d93..000000000000
--- a/science/minc2/files/patch-progs_mincdump_mincdump.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- progs/mincdump/mincdump.h.orig 2012-09-24 17:35:36 UTC
-+++ progs/mincdump/mincdump.h
-@@ -15,7 +15,7 @@
- #define Printf (void) printf
-
- typedef int boolean;
--enum {false=0, true=1};
-+enum {my_false=0, my_true=1};
-
- struct ncdim { /* dimension */
- char name[NC_MAX_NAME];
diff --git a/science/minc2/files/patch-progs_mincdump_vardata.c b/science/minc2/files/patch-progs_mincdump_vardata.c
deleted file mode 100644
index b22617aa7391..000000000000
--- a/science/minc2/files/patch-progs_mincdump_vardata.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- progs/mincdump/vardata.c.orig 2012-09-24 17:35:36 UTC
-+++ progs/mincdump/vardata.c
-@@ -775,7 +775,7 @@ vardata(
-
- if (vrank > 0) {
- corsav = cor[vrank-1];
-- if (fsp->brief_data_cmnts != false
-+ if (fsp->brief_data_cmnts != my_false
- && vrank > 1
- && left > 0) { /* print brief comment with indices range */
- Printf("// %s(",vp->name);
diff --git a/science/minc2/files/patch-progs_mincpik_mincpik.in b/science/minc2/files/patch-progs_mincpik_mincpik.in
deleted file mode 100644
index 40bdb5d54eb5..000000000000
--- a/science/minc2/files/patch-progs_mincpik_mincpik.in
+++ /dev/null
@@ -1,38 +0,0 @@
---- progs/mincpik/mincpik.in.orig 2012-09-24 17:35:36 UTC
-+++ progs/mincpik/mincpik.in
-@@ -576,8 +576,11 @@ font point size for the title
-
- create an annotated bar to match the image (use height of the output image)
-
-+=back
-
- =head3 Image range and lookup table options
-+
-+=over
-
- =item B<--range>
-
-@@ -595,8 +598,11 @@ automatically determine image range usin
-
- arguments to pass to minclookup
-
-+=back
-
- =head3 Slicing options
-+
-+=over
-
- =item B<-s> B<--slice>
-
-@@ -614,8 +620,11 @@ get a coronal (y) slice
-
- get a sagital (x) slice
-
-+=back
-
- =head3 Triplanar options
-+
-+=over
-
- =item B<-t> B<--triplanar>
-
diff --git a/science/minc2/pkg-descr b/science/minc2/pkg-descr
deleted file mode 100644
index 415891c58780..000000000000
--- a/science/minc2/pkg-descr
+++ /dev/null
@@ -1,2 +0,0 @@
-MINC (Medical Imaging NetCDF) is a medical imaging data format and an
-associated set of tools and libraries.
diff --git a/science/minc2/pkg-plist b/science/minc2/pkg-plist
deleted file mode 100644
index 7b9be208166e..000000000000
--- a/science/minc2/pkg-plist
+++ /dev/null
@@ -1,124 +0,0 @@
-bin/dcm2mnc
-bin/ecattominc
-bin/invert_raw_image
-bin/minc_modify_header
-bin/mincaverage
-bin/mincblob
-bin/minccalc
-bin/minccmp
-bin/minccomplete
-bin/mincconcat
-bin/mincconvert
-bin/minccopy
-bin/mincdiff
-bin/mincdump
-bin/mincedit
-bin/mincexpand
-bin/mincextract
-bin/mincgen
-bin/mincheader
-bin/minchistory
-bin/mincinfo
-bin/minclookup
-bin/mincmakescalar
-bin/mincmakevector
-bin/mincmath
-bin/mincmorph
-bin/mincpik
-bin/mincresample
-bin/mincreshape
-bin/mincsample
-bin/mincstats
-bin/minctoecat
-bin/minctoraw
-bin/mincview
-bin/mincwindow
-bin/mnc2nii
-bin/nii2mnc
-bin/rawtominc
-bin/transformtags
-bin/upet2mnc
-bin/vff2mnc
-bin/voxeltoworld
-bin/worldtovoxel
-bin/xfm2def
-bin/xfmconcat
-bin/xfmflip
-bin/xfminvert
-include/ParseArgv.h
-include/minc.h
-include/minc2.h
-include/minc_compat.h
-include/minc_simple.h
-include/nd_loop.h
-include/time_stamp.h
-include/volume_io.h
-include/volume_io/alloc.h
-include/volume_io/arrays.h
-include/volume_io/basic.h
-include/volume_io/def_math.h
-include/volume_io/files.h
-include/volume_io/geom_structs.h
-include/volume_io/geometry.h
-include/volume_io/internal_volume_io.h
-include/volume_io/multidim.h
-include/volume_io/progress.h
-include/volume_io/string_funcs.h
-include/volume_io/system_dependent.h
-include/volume_io/transforms.h
-include/volume_io/vol_io_prototypes.h
-include/volume_io/volume.h
-include/volume_io/volume_cache.h
-include/voxel_loop.h
-lib/libminc2.a
-lib/libminc2.so
-lib/libminc2.so.3
-lib/libminc2.so.3.0.0
-lib/libvolume_io2.a
-lib/libvolume_io2.so
-lib/libvolume_io2.so.3
-lib/libvolume_io2.so.3.0.0
-share/man/man1/dcm2mnc.1.gz
-share/man/man1/ecattominc.1.gz
-share/man/man1/invert_raw_image.1.gz
-share/man/man1/minc_modify_header.1.gz
-share/man/man1/mincaverage.1.gz
-share/man/man1/mincblob.1.gz
-share/man/man1/minccalc.1.gz
-share/man/man1/minccmp.1.gz
-share/man/man1/minccomplete.1.gz
-share/man/man1/mincconcat.1.gz
-share/man/man1/mincconvert.1.gz
-share/man/man1/minccopy.1.gz
-share/man/man1/mincdiff.1.gz
-share/man/man1/mincedit.1.gz
-share/man/man1/mincexpand.1.gz
-share/man/man1/mincextract.1.gz
-share/man/man1/mincgen.1.gz
-share/man/man1/mincheader.1.gz
-share/man/man1/minchistory.1.gz
-share/man/man1/mincinfo.1.gz
-share/man/man1/minclookup.1.gz
-share/man/man1/mincmakescalar.1.gz
-share/man/man1/mincmakevector.1.gz
-share/man/man1/mincmath.1.gz
-share/man/man1/mincpik.1.gz
-share/man/man1/mincresample.1.gz
-share/man/man1/mincreshape.1.gz
-share/man/man1/mincstats.1.gz
-share/man/man1/minctoecat.1.gz
-share/man/man1/minctoraw.1.gz
-share/man/man1/mincview.1.gz
-share/man/man1/mincwindow.1.gz
-share/man/man1/mnc2nii.1.gz
-share/man/man1/nii2mnc.1.gz
-share/man/man1/rawtominc.1.gz
-share/man/man1/transformtags.1.gz
-share/man/man1/upet2mnc.1.gz
-share/man/man1/vff2mnc.1.gz
-share/man/man1/voxeltoworld.1.gz
-share/man/man1/xfm2def.1.gz
-share/man/man1/xfmconcat.1.gz
-share/man/man1/xfmflip.1.gz
-share/man/man1/xfminvert.1.gz
-share/man/man3/ParseArgv.3.gz