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charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jrm X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 8b579e248ab006fc8fd4869a89fefad5fd0e4837 Auto-Submitted: auto-generated Date: Thu, 19 Feb 2026 16:11:04 +0000 Message-Id: <69973618.313ea.537bf54f@gitrepo.freebsd.org> The branch main has been updated by jrm: URL: https://cgit.FreeBSD.org/ports/commit/?id=8b579e248ab006fc8fd4869a89fefad5fd0e4837 commit 8b579e248ab006fc8fd4869a89fefad5fd0e4837 Author: Joseph Mingrone AuthorDate: 2026-02-19 15:45:59 +0000 Commit: Joseph Mingrone CommitDate: 2026-02-19 16:08:51 +0000 biology/paml: Update to 4.10.10 Release notes: https://github.com/abacus-gene/paml/releases/tag/v4.10.10 Sponsored by: The FreeBSD Foundation --- biology/paml/Makefile | 2 +- biology/paml/distinfo | 6 +++--- biology/paml/pkg-plist | 7 +++++++ 3 files changed, 11 insertions(+), 4 deletions(-) diff --git a/biology/paml/Makefile b/biology/paml/Makefile index 4a6375689d5e..aee6e6d4c6cb 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -1,6 +1,6 @@ PORTNAME= paml DISTVERSIONPREFIX= v -DISTVERSION= 4.10.9 +DISTVERSION= 4.10.10 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org diff --git a/biology/paml/distinfo b/biology/paml/distinfo index 7dd47591a370..d949ab331862 100644 --- a/biology/paml/distinfo +++ b/biology/paml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1747232666 -SHA256 (abacus-gene-paml-v4.10.9_GH0.tar.gz) = 19ca9d484d729324748b9c86453e4c8f4a1fa79ad6fa3ac7cdbfaa7d0bfb8c22 -SIZE (abacus-gene-paml-v4.10.9_GH0.tar.gz) = 3920159 +TIMESTAMP = 1771514671 +SHA256 (abacus-gene-paml-v4.10.10_GH0.tar.gz) = 173e8754ad78000371099a96910f2c72b03a7b7b13c717405dc23385ae2f2c0f +SIZE (abacus-gene-paml-v4.10.10_GH0.tar.gz) = 3835148 diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist index 02f053d2563e..f839843890b2 100644 --- a/biology/paml/pkg-plist +++ b/biology/paml/pkg-plist @@ -111,6 +111,13 @@ bin/yn00 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/brown.trees %%PORTEXAMPLES%%%%EXAMPLESDIR%%/codeml.ctl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/codonml.ctl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combine-mcmc/README.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combine-mcmc/to_combine/mcmc_1.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combine-mcmc/to_combine/mcmc_21.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combine-mcmc/to_combine/mcmc_3.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combine-mcmc/to_combine/mcmc_5.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/combine-mcmc/wrong_file/mcmc_4.txt +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dating-cross-bracing/README.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dNdSGene1.nuc %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dat/MtZoa.dat %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dat/cpREV10.dat