git: 101f13edbc07 - main - biology/bamtools: Update to 2.5.3
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Date: Mon, 19 May 2025 21:23:38 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=101f13edbc077511ff41449defba4ccb3fcbcd0a
commit 101f13edbc077511ff41449defba4ccb3fcbcd0a
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2025-05-19 21:21:57 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2025-05-19 21:21:57 +0000
biology/bamtools: Update to 2.5.3
Fix endian issues
Changes: https://github.com/pezmaster31/bamtools/releases
Reported by: portscout
---
biology/bamtools/Makefile | 5 +++--
biology/bamtools/distinfo | 6 +++---
biology/bamtools/pkg-descr | 1 -
biology/bamtools/pkg-plist | 2 +-
4 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/biology/bamtools/Makefile b/biology/bamtools/Makefile
index 8ba4a4d667ec..775c1f88cb59 100644
--- a/biology/bamtools/Makefile
+++ b/biology/bamtools/Makefile
@@ -1,7 +1,6 @@
PORTNAME= bamtools
DISTVERSIONPREFIX= v
-DISTVERSION= 2.5.2
-PORTREVISION= 2
+DISTVERSION= 2.5.3
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@@ -19,4 +18,6 @@ GH_ACCOUNT= pezmaster31
CMAKE_ON+= BUILD_SHARED_LIBS
+PLIST_SUB= PORTVERSION=${PORTVERSION}
+
.include <bsd.port.mk>
diff --git a/biology/bamtools/distinfo b/biology/bamtools/distinfo
index e36197452212..dd64a579b51b 100644
--- a/biology/bamtools/distinfo
+++ b/biology/bamtools/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1625529459
-SHA256 (pezmaster31-bamtools-v2.5.2_GH0.tar.gz) = 4d8b84bd07b673d0ed41031348f10ca98dd6fa6a4460f9b9668d6f1d4084dfc8
-SIZE (pezmaster31-bamtools-v2.5.2_GH0.tar.gz) = 245729
+TIMESTAMP = 1747676701
+SHA256 (pezmaster31-bamtools-v2.5.3_GH0.tar.gz) = 7d4e59bac7c03bde488fe43e533692f78b5325a097328785ec31373ffac08344
+SIZE (pezmaster31-bamtools-v2.5.3_GH0.tar.gz) = 245648
diff --git a/biology/bamtools/pkg-descr b/biology/bamtools/pkg-descr
index 632f635d85bd..e5116b7fbba8 100644
--- a/biology/bamtools/pkg-descr
+++ b/biology/bamtools/pkg-descr
@@ -1,6 +1,5 @@
BamTools provides both a programmer's API and an end-user's toolkit for
handling BAM files.
-
BAM is the binary alternative to the sequence alignment/map (SAM) format used
for storing genetic sequence data. It uses BGZF block compression implemented
on top of the standard gzip file format to provide good compression while
diff --git a/biology/bamtools/pkg-plist b/biology/bamtools/pkg-plist
index a976799fd806..df5a98027cbe 100644
--- a/biology/bamtools/pkg-plist
+++ b/biology/bamtools/pkg-plist
@@ -21,5 +21,5 @@ include/bamtools/api/api_global.h
include/bamtools/api/bamtools_api_export.h
include/bamtools/shared/bamtools_global.h
lib/libbamtools.so
-lib/libbamtools.so.2.5.2
+lib/libbamtools.so.%%PORTVERSION%%
libdata/pkgconfig/bamtools-1.pc