git: d4a506ad4560 - main - math/R: Update to 4.5.0

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From: Joseph Mingrone <jrm_at_FreeBSD.org>
Date: Thu, 08 May 2025 19:54:24 UTC
The branch main has been updated by jrm:

URL: https://cgit.FreeBSD.org/ports/commit/?id=d4a506ad45603b71012e479a7c9019f15317d8a1

commit d4a506ad45603b71012e479a7c9019f15317d8a1
Author:     Joseph Mingrone <jrm@FreeBSD.org>
AuthorDate: 2025-04-29 02:57:59 +0000
Commit:     Joseph Mingrone <jrm@FreeBSD.org>
CommitDate: 2025-05-08 19:52:08 +0000

    math/R: Update to 4.5.0
    
    Release announcement:   https://hypatia.math.ethz.ch/pipermail/r-announce/2025//000710.html
    Sponsored by:   The FreeBSD Foundation
---
 math/R/Makefile                                      |  9 +++++----
 math/R/distinfo                                      |  6 +++---
 math/R/files/patch-src_library_grDevices_src_devPS.c | 10 ++++++++++
 math/R/pkg-plist                                     | 16 ++++++++++++++++
 4 files changed, 34 insertions(+), 7 deletions(-)

diff --git a/math/R/Makefile b/math/R/Makefile
index ee707f0d139d..630b3861c36e 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	R
-DISTVERSION=	4.4.3
+DISTVERSION=	4.5.0
 CATEGORIES=	math lang
 MASTER_SITES=	CRAN/src/base/R-${PORTVERSION:C|\..*||}
 
@@ -14,7 +14,8 @@ ONLY_FOR_ARCHS=	aarch64 amd64 armv6 armv7 i386 powerpc powerpc64 powerpc64le
 BUILD_DEPENDS=	texi2any:print/texinfo
 LIB_DEPENDS=	libcurl.so:ftp/curl \
 		libdeflate.so:archivers/libdeflate \
-		libpcre2-8.so:devel/pcre2
+		libpcre2-8.so:devel/pcre2 \
+		libzstd.so:archivers/zstd
 # R packages may require GNU make or cmake to build
 RUN_DEPENDS=	cmake:devel/cmake-core \
 		gmake:devel/gmake
@@ -25,7 +26,7 @@ RUN_DEPENDS=	cmake:devel/cmake-core \
 # - Create ports for each of the recommended packages
 # - Create a meta-port for the recommended packages
 
-USES=		compiler:c++11-lang cpe fortran gmake iconv libtool localbase \
+USES=		compiler:c++23-lang cpe fortran gmake iconv libtool localbase \
 		pathfix perl5 readline
 CPE_VENDOR=	r-project
 USE_LDCONFIG=	${PREFIX}/lib/R/lib
@@ -93,7 +94,7 @@ OPENBLAS_USES=			blaslapack:openblas
 OPENBLAS_CONFIGURE_ON=		--disable-BLAS-shlib
 OPENMP_CONFIGURE_ENABLE=	openmp
 PNG_IMPLIES=			X11
-PNG_LIB_DEPENDS=		libpng.so:graphics/png
+PNG_LIB_DEPENDS=		libpng16.so:graphics/png
 PNG_CONFIGURE_WITH=		libpng
 RBLAS_CONFIGURE_ON=		--enable-BLAS-shlib \
 				--without-blas \
diff --git a/math/R/distinfo b/math/R/distinfo
index b352e2ddbee1..7aaf6a68fe54 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1740868304
-SHA256 (R-4.4.3.tar.gz) = 0d93d224442dea253c2b086f088db6d0d3cfd9b592cd5496e8cb2143e90fc9e8
-SIZE (R-4.4.3.tar.gz) = 40234425
+TIMESTAMP = 1745889281
+SHA256 (R-4.5.0.tar.gz) = 3b33ea113e0d1ddc9793874d5949cec2c7386f66e4abfb1cef9aec22846c3ce1
+SIZE (R-4.5.0.tar.gz) = 40466335
diff --git a/math/R/files/patch-src_library_grDevices_src_devPS.c b/math/R/files/patch-src_library_grDevices_src_devPS.c
new file mode 100644
index 000000000000..10c527a43856
--- /dev/null
+++ b/math/R/files/patch-src_library_grDevices_src_devPS.c
@@ -0,0 +1,10 @@
+--- src/library/grDevices/src/devPS.c.orig	2025-04-29 02:15:09 UTC
++++ src/library/grDevices/src/devPS.c
+@@ -29,6 +29,7 @@
+ #include <ctype.h>
+ #include <limits.h> /* required for MB_LEN_MAX */
+ #include <string.h>
++#include <unistd.h>
+ 
+ #include <wchar.h>
+ #include <wctype.h>
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index 5d6315970735..172c87bd7f54 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -1245,6 +1245,7 @@ lib/R/library/tools/help/tools.rdx
 lib/R/library/tools/html/00Index.html
 lib/R/library/tools/html/R.css
 lib/R/library/tools/libs/tools.so
+lib/R/library/tools/wre.txt
 lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/ar/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/ar/LC_MESSAGES/R-methods.mo
@@ -1394,20 +1395,26 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/tools.mo
 %%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/utils.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-compiler.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-grDevices.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-graphics.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-grid.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-methods.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-splines.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-stats.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-stats4.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-tcltk.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-tools.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-utils.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/RGui.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/grDevices.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/graphics.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/grid.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/methods.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/splines.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/stats.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/tcltk.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/tools.mo
@@ -1457,10 +1464,13 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/hi/LC_MESSAGES/tools.mo
 %%NLS%%lib/R/library/translations/hi/LC_MESSAGES/utils.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-compiler.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-graphics.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-methods.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-parallel.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-splines.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-stats.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-stats4.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-tcltk.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-tools.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-utils.mo
@@ -1470,6 +1480,7 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/graphics.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/grid.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/splines.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/stats.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/tcltk.mo
 %%NLS%%lib/R/library/translations/hu/LC_MESSAGES/tools.mo
@@ -1574,7 +1585,12 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/lt/LC_MESSAGES/tcltk.mo
 %%NLS%%lib/R/library/translations/lt/LC_MESSAGES/tools.mo
 %%NLS%%lib/R/library/translations/lt/LC_MESSAGES/utils.mo
+%%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R-tcltk.mo
+%%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R-tools.mo
+%%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R-utils.mo
 %%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R.mo
 %%NLS%%lib/R/library/translations/ne/LC_MESSAGES/RGui.mo
 %%NLS%%lib/R/library/translations/nn/LC_MESSAGES/R-base.mo