git: d758b1caa19e - main - Multiple biology ports: Replace pypi homepage with github
Date: Fri, 21 Feb 2025 13:05:03 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=d758b1caa19eb6a43d8efe332d5ea0da8e9dbd96
commit d758b1caa19eb6a43d8efe332d5ea0da8e9dbd96
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2025-02-21 13:03:10 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2025-02-21 13:04:08 +0000
Multiple biology ports: Replace pypi homepage with github
portscout apparently can't work with PYPI homepages
---
biology/py-bcbio-gff/Makefile | 4 +---
biology/py-dna-features-viewer/Makefile | 2 +-
biology/py-dnaio/Makefile | 2 +-
biology/py-goatools/Makefile | 2 +-
biology/py-ont-fast5-api/Makefile | 2 +-
biology/py-pybigwig/Makefile | 2 +-
biology/py-pywgsim/Makefile | 2 +-
7 files changed, 7 insertions(+), 9 deletions(-)
diff --git a/biology/py-bcbio-gff/Makefile b/biology/py-bcbio-gff/Makefile
index 325a33a56077..2a3b0260c9fd 100644
--- a/biology/py-bcbio-gff/Makefile
+++ b/biology/py-bcbio-gff/Makefile
@@ -6,9 +6,7 @@ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Read and write Generic Feature Format (GFF) with Biopython integration
-WWW= https://pypi.org/project/bcbio-gff/ \
- https://biopython.org/wiki/GFF_Parsing \
- https://github.com/chapmanb/bcbb/tree/master/gff/
+WWW= https://github.com/chapmanb/bcbb/tree/master/gff/
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
diff --git a/biology/py-dna-features-viewer/Makefile b/biology/py-dna-features-viewer/Makefile
index 906de191ad5d..faefb8faf5e8 100644
--- a/biology/py-dna-features-viewer/Makefile
+++ b/biology/py-dna-features-viewer/Makefile
@@ -7,7 +7,7 @@ DISTNAME= dna_features_viewer-${PORTVERSION}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Python library to visualize DNA features, e.g. GenBank or Gff files
-WWW= https://pypi.python.org/project/dna-features-viewer/
+WWW= https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENCE.txt
diff --git a/biology/py-dnaio/Makefile b/biology/py-dnaio/Makefile
index 6dc8951da918..3baff38a1558 100644
--- a/biology/py-dnaio/Makefile
+++ b/biology/py-dnaio/Makefile
@@ -6,7 +6,7 @@ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= wen@FreeBSD.org
COMMENT= Read and write FASTQ and FASTA
-WWW= https://pypi.python.org/pypi/dnaio
+WWW= https://github.com/marcelm/dnaio/
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
diff --git a/biology/py-goatools/Makefile b/biology/py-goatools/Makefile
index ef6eba5004f8..44c8f67d9ffd 100644
--- a/biology/py-goatools/Makefile
+++ b/biology/py-goatools/Makefile
@@ -7,7 +7,7 @@ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Tools for processing and visualizing Gene Ontology terms
-WWW= https://pypi.python.org/pypi/goatools
+WWW= https://github.com/tanghaibao/goatools/
LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
diff --git a/biology/py-ont-fast5-api/Makefile b/biology/py-ont-fast5-api/Makefile
index e154ea248556..9ead9df1cde1 100644
--- a/biology/py-ont-fast5-api/Makefile
+++ b/biology/py-ont-fast5-api/Makefile
@@ -7,7 +7,7 @@ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Interface to HDF5 files in Oxford Nanopore .fast5 format
-WWW= https://pypi.python.org/pypi/ont_fast5_api
+WWW= https://github.com/nanoporetech/ont_fast5_api/
LICENSE= MPL20
LICENSE_FILE= ${WRKSRC}/LICENSE.md
diff --git a/biology/py-pybigwig/Makefile b/biology/py-pybigwig/Makefile
index 76d160a9e818..2bdae8095d8b 100644
--- a/biology/py-pybigwig/Makefile
+++ b/biology/py-pybigwig/Makefile
@@ -6,7 +6,7 @@ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Python access to bigWig files using libBigWig
-WWW= https://pypi.org/project/pyBigWig/
+WWW= https://github.com/deeptools/pyBigWig/
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
diff --git a/biology/py-pywgsim/Makefile b/biology/py-pywgsim/Makefile
index 14bc3cbb17ba..e255e8a1fbc6 100644
--- a/biology/py-pywgsim/Makefile
+++ b/biology/py-pywgsim/Makefile
@@ -7,7 +7,7 @@ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Modified wgsim genomic data simulator
-WWW= https://pypi.python.org/pypi/pywgsim
+WWW= https://github.com/ialbert/pywgsim/
LICENSE= MIT