From nobody Sat Apr 26 20:37:10 2025 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4ZlM2Z3NPTz5tkty; Sat, 26 Apr 2025 20:37:10 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R11" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4ZlM2Z2qbCz3PP8; Sat, 26 Apr 2025 20:37:10 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1745699830; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=z0/jhFqomiT5qZMgm6TSO8Sqk9zdZIATNrKKnV4ocCw=; b=cLPQM4x37SJlJ2b6zm588QYLE+20Q7E28+YEKBSVdgD78cMQR9nFVRDIX1VPVY0BnHV+Qs tPMCMLmQniYOSCJcxDsCvrWByAgWwDZwtS1+XBU8ckPipNVCGVGDGClYqgBDfB+b280+Go CRWaVV6h7Qs3AxzBjjqvfr+Srl+KtsJETM+M2R0Xg2Nxd9rbexOJcg3cBMWyBg8ywMdf7d B8lczISHtVAynzhNYESoUhlnOJgU4I0MP8sK0ok9KDNaWH2Txl6ynuaLQON7co6UtWqdYf vz7wgXXUx6PLsyKQIZcD/sR0lCn4Hfpvx1I+4/8iYM7es3XGn1HpYFyuXuMRcQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1745699830; a=rsa-sha256; cv=none; b=rtH8n4y2aZ8vZsYP5NOjtWqBjWvbV/AAmz9cRsBLKtfh8XPUWuz8+33pBsm2qVCqzOqdWR Vb3o//O4+02PQZpFbbnQDWm21V/OfvyY7nDBNXzG5+nwhU7cpb/MdlOLrYxH1olsC/gOYf ENAjRCnBMH++7FwlqiT+RA/WbVloHbf+0eX1oil2wO+Us2qBRJxBi8bEWIMli/uIUrpSWJ 0adv3ktQxtk93zfu3TI/FIIQR2lP3YV6g1ljpem0sZLISGvMKBSAv9wHFy/c5T2fxuKYX2 voQzP8YEYjTHF3KKuJOPGbSpIjuUV48EO1cUYpgwor2M3BfYkbEvzYHp0UFqog== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1745699830; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=z0/jhFqomiT5qZMgm6TSO8Sqk9zdZIATNrKKnV4ocCw=; b=S+h70lOiv8YPXggY2MDbpAlGDQPDKG7pgglXpcJSm4hFHMZWmsz7I7xAft3p75SzKk2373 gyTwPHIIO2lsQD+0wKZaHgcxSgUgHaFHK88KPl2ruSXkBlSgNqaw7hi2VvpqUajnTewF4n py0rBMiEXsy3aVhb/QsDFex1V8B60OGK7JKaBQdtzO0eVBHNRK5vMirMOGlAJMaRMfmSgV Hkw4UEV5ShmzINxV5uuHxS/J0bd92I7O9BXfc3yt0P9+oatJadUh9lpa22UvtrFURJGwSb 0oz4pk+CECwte1VUnvLv5FIpPcDxoFDq7p17JXwPwhJDADG7mD4zlZ/lDQesHg== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4ZlM2Z24y2zcKg; Sat, 26 Apr 2025 20:37:10 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 53QKbA1f046381; Sat, 26 Apr 2025 20:37:10 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 53QKbALI046378; Sat, 26 Apr 2025 20:37:10 GMT (envelope-from git) Date: Sat, 26 Apr 2025 20:37:10 GMT Message-Id: <202504262037.53QKbALI046378@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: f680350d5ef9 - main - biology/biolibc: Update to 0.2.7 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: f680350d5ef91f6a276f734503f5259e4260061d Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=f680350d5ef91f6a276f734503f5259e4260061d commit f680350d5ef91f6a276f734503f5259e4260061d Author: Jason W. Bacon AuthorDate: 2025-04-26 20:35:36 +0000 Commit: Jason W. Bacon CommitDate: 2025-04-26 20:35:36 +0000 biology/biolibc: Update to 0.2.7 Minor fixes and enhancements Changes: https://github.com/auerlab/biolibc/releases --- biology/biolibc/Makefile | 3 +-- biology/biolibc/distinfo | 6 +++--- biology/biolibc/pkg-plist | 2 ++ 3 files changed, 6 insertions(+), 5 deletions(-) diff --git a/biology/biolibc/Makefile b/biology/biolibc/Makefile index fd2e2a4b4e85..52f129503ae6 100644 --- a/biology/biolibc/Makefile +++ b/biology/biolibc/Makefile @@ -1,6 +1,5 @@ PORTNAME= biolibc -DISTVERSION= 0.2.6-4 -DISTVERSIONSUFFIX= -g723ac84 +DISTVERSION= 0.2.7 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/biolibc/distinfo b/biology/biolibc/distinfo index 8381fe58abcf..ba921fc61c03 100644 --- a/biology/biolibc/distinfo +++ b/biology/biolibc/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1716122167 -SHA256 (auerlab-biolibc-0.2.6-4-g723ac84_GH0.tar.gz) = d467c954b3d7ffaafe1dea36006113bf7b412285fdc07e71c504fd5b5db5ae64 -SIZE (auerlab-biolibc-0.2.6-4-g723ac84_GH0.tar.gz) = 147951 +TIMESTAMP = 1745681520 +SHA256 (auerlab-biolibc-0.2.7_GH0.tar.gz) = d01f8e200a92ae893e69a6e2ed4d7e3939bd2559d1dabe87b9150496eba65cbe +SIZE (auerlab-biolibc-0.2.7_GH0.tar.gz) = 149543 diff --git a/biology/biolibc/pkg-plist b/biology/biolibc/pkg-plist index a8b6a302ee2b..336dd9083344 100644 --- a/biology/biolibc/pkg-plist +++ b/biology/biolibc/pkg-plist @@ -281,7 +281,9 @@ share/man/man3/bl_fasta_set_seq_cpy.3.gz share/man/man3/bl_fasta_set_seq_len.3.gz share/man/man3/bl_fasta_write.3.gz share/man/man3/bl_fastq_3p_trim.3.gz +share/man/man3/bl_fastq_5p_trim.3.gz share/man/man3/bl_fastq_find_3p_low_qual.3.gz +share/man/man3/bl_fastq_find_5p_low_qual.3.gz share/man/man3/bl_fastq_free.3.gz share/man/man3/bl_fastq_init.3.gz share/man/man3/bl_fastq_name_cmp.3.gz