git: 2a131a985d90 - main - math/R: Update to 4.4.0

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From: Joseph Mingrone <jrm_at_FreeBSD.org>
Date: Thu, 02 May 2024 03:40:24 UTC
The branch main has been updated by jrm:

URL: https://cgit.FreeBSD.org/ports/commit/?id=2a131a985d908ac72c3450158f195dc339236d3b

commit 2a131a985d908ac72c3450158f195dc339236d3b
Author:     Joseph Mingrone <jrm@FreeBSD.org>
AuthorDate: 2024-04-25 19:37:54 +0000
Commit:     Joseph Mingrone <jrm@FreeBSD.org>
CommitDate: 2024-05-02 03:32:43 +0000

    math/R: Update to 4.4.0
    
    Changes:        https://hypatia.math.ethz.ch/pipermail/r-announce/2024/000701.html
    Sponsored by:   The FreeBSD Foundation
---
 math/R/Makefile                                    |   5 +-
 math/R/distinfo                                    |   6 +-
 .../R/files/extra-patch-src_extra_blas_Makefile.in |  21 +--
 .../extra-patch-src_modules_lapack_Makefile.in     |  47 ++---
 math/R/files/patch-src_main_Makefile.in            |  17 +-
 math/R/pkg-plist                                   | 194 ++++++++++++++++++++-
 6 files changed, 225 insertions(+), 65 deletions(-)

diff --git a/math/R/Makefile b/math/R/Makefile
index d32baa311aea..f5962fe47848 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,6 +1,5 @@
 PORTNAME=	R
-DISTVERSION=	4.3.3
-PORTREVISION=	1
+DISTVERSION=	4.4.0
 CATEGORIES=	math lang
 MASTER_SITES=	CRAN/src/base/R-${PORTVERSION:C|\..*||}
 
@@ -14,6 +13,7 @@ ONLY_FOR_ARCHS=	aarch64 amd64 armv6 armv7 i386 powerpc powerpc64 powerpc64le
 
 BUILD_DEPENDS=	texi2any:print/texinfo
 LIB_DEPENDS=	libcurl.so:ftp/curl \
+		libdeflate.so:archivers/libdeflate \
 		libpcre2-8.so:devel/pcre2
 # R packages may require GNU make or cmake to build
 RUN_DEPENDS=	cmake:devel/cmake-core \
@@ -130,7 +130,6 @@ LLD_UNSAFE=	yes
 .endif
 
 post-patch:
-	@${REINPLACE_CMD} -e "s|/usr/local|${LOCALBASE}|g" ${WRKSRC}/configure
 	@${REINPLACE_CMD} \
 		-e "s|%%FULLVER%%|${DISTVERSION}|" \
 		-e "s|%%MAJORVER%%|${_MAJORVER}|" \
diff --git a/math/R/distinfo b/math/R/distinfo
index 40dd95f18dba..521171b7c5e3 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1709307169
-SHA256 (R-4.3.3.tar.gz) = 80851231393b85bf3877ee9e39b282e750ed864c5ec60cbd68e6e139f0520330
-SIZE (R-4.3.3.tar.gz) = 35861202
+TIMESTAMP = 1714060267
+SHA256 (R-4.4.0.tar.gz) = ace4125f9b976d2c53bcc5fca30c75e30d4edc401584859cbadb080e72b5f030
+SIZE (R-4.4.0.tar.gz) = 37335563
diff --git a/math/R/files/extra-patch-src_extra_blas_Makefile.in b/math/R/files/extra-patch-src_extra_blas_Makefile.in
index 07e097e92725..18a1cb6ff7ec 100644
--- a/math/R/files/extra-patch-src_extra_blas_Makefile.in
+++ b/math/R/files/extra-patch-src_extra_blas_Makefile.in
@@ -1,34 +1,29 @@
---- src/extra/blas/Makefile.in.orig	2020-05-05 02:47:09 UTC
+--- src/extra/blas/Makefile.in.orig	2024-05-01 15:06:18 UTC
 +++ src/extra/blas/Makefile.in
-@@ -16,11 +16,11 @@ ALL_FFLAGS = $(ALL_FFLAGS_LO)
- 
- SOURCES = blas00.c blas.f cmplxblas.f
- 
--@BUILD_LTO_CHECK_FALSE@Rblas_la = libRblas$(R_DYLIB_EXT)
-+@BUILD_LTO_CHECK_FALSE@Rblas_la = libRblas$(R_DYLIB_EXT).%%FULLVER%%
- @BUILD_LTO_CHECK_TRUE@Rblas_la = libRblas.a
+@@ -25,7 +25,7 @@ Rblas_la = libRblas$(R_DYLIB_EXT)
+ Rblas_la = libRblas$(R_DYLIB_EXT)
  ## @RBLAS_LDFLAGS@ is used on macOS
  ## first for internal BLAS
 -Rblas_la_LIBADD = @RBLAS_LDFLAGS@ $(FLIBS_IN_SO)
-+Rblas_la_LIBADD = -Wl,-soname,libRblas.so.%%MAJORVER%% $(FLIBS_IN_SO)
++Rblas_la_LIBADD = @RBLAS_LDFLAGS@ -Wl,-soname,libRblas.so.%%MAJORVER%% $(FLIBS_IN_SO)
  ## then external one
  Rblas_la_LIBADD0 = @RBLAS_LDFLAGS@
  
-@@ -45,6 +45,8 @@ Rblas_install: $(Rblas_la)
+@@ -66,6 +66,8 @@ Rblas_install: $(Rblas_la)
  	@$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
  	@$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rblas_la) \
  	  "$(DESTDIR)$(Rexeclibdir)/$(Rblas_la)"
 +	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rblas_la) libRblas.so.%%MAJORVER%%
-+	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rblas_la) libRblas.so
++	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rblas_la) libRblas.so.%%FULLVER%%
  
  Rblas_install-strip: $(Rblas_la)
  	@$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
-@@ -52,6 +54,8 @@ Rblas_install-strip: $(Rblas_la)
+@@ -73,6 +75,8 @@ Rblas_install-strip: $(Rblas_la)
  	@if test -n "$(STRIP_SHARED_LIB)"; then \
  	  $(STRIP_SHARED_LIB) "$(DESTDIR)$(Rexeclibdir)/$(Rblas_la)" ;\
  	fi
 +	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rblas_la) libRblas.so.%%MAJORVER%%
-+	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rblas_la) libRblas.so
++	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rblas_la) libRblas.so.%%FULLVER%%
  
  mostlyclean: clean
  clean:
diff --git a/math/R/files/extra-patch-src_modules_lapack_Makefile.in b/math/R/files/extra-patch-src_modules_lapack_Makefile.in
index 3d9f84cb4fbe..e792a035ebc8 100644
--- a/math/R/files/extra-patch-src_modules_lapack_Makefile.in
+++ b/math/R/files/extra-patch-src_modules_lapack_Makefile.in
@@ -1,43 +1,34 @@
---- src/modules/lapack/Makefile.in.orig	2020-05-05 03:51:08 UTC
+--- src/modules/lapack/Makefile.in.orig	2024-05-02 02:59:59 UTC
 +++ src/modules/lapack/Makefile.in
-@@ -41,7 +41,7 @@ lapack_la_OBJECTS = $(OBJECTS)
- lapack_la_LDFLAGS = @LAPACK_LDFLAGS@
- lapack_la_LIBADD = $(LIBR1) @DYLIB_UNDEFINED_ALLOWED_FALSE@ $(LIBINTL)
- 
--@BUILD_LTO_CHECK_FALSE@Rlapack_la = libRlapack$(R_DYLIB_EXT)
-+@BUILD_LTO_CHECK_FALSE@Rlapack_la = libRlapack$(R_DYLIB_EXT).%%FULLVER%%
- @BUILD_LTO_CHECK_TRUE@Rlapack_la = libRlapack.a
- Rlapack_la_OBJECTS = $(LIBOBJECTS)
- ## This used to skip FLIBS, but that relied on all the functions
-@@ -87,17 +87,21 @@ $(lapack_la): $(lapack_la_OBJECTS)
- ## Include BLAS here, as with (static) ATLAS that pulls all the
+@@ -110,12 +110,14 @@ $(Rlapack_la): $(Rlapack_la_OBJECTS)
  ## BLAS routines into one place.
- $(Rlapack_la): $(LIBOBJECTS)
--	@BUILD_LTO_CHECK_FALSE@$(DYLIB_LINK) -o $@ $(LIBOBJECTS) @RLAPACK_LDFLAGS@ @BLAS_LIBS@ $(Rlapack_la_LIBADD)
-+	@BUILD_LTO_CHECK_FALSE@$(DYLIB_LINK) -o $@ $(LIBOBJECTS) -Wl,-soname,libRlapack.so.%%MAJORVER%% @BLAS_LIBS@ $(Rlapack_la_LIBADD)
- 	@BUILD_LTO_CHECK_TRUE@$(AR) -cr $@ $(LIBOBJECTS)
+ ## FIXME:  @BLAS_LIBS@ is probably  not needed for newAccelerate.
+ $(Rlapack_la): $(Rlapack_la_OBJECTS)
+-	$(DYLIB_LINK) -o $@ $(Rlapack_la_OBJECTS) @RLAPACK_LDFLAGS@ @BLAS_LIBS@ $(Rlapack_la_LIBADD)
++	$(DYLIB_LINK) -o $@ $(Rlapack_la_OBJECTS) @RLAPACK_LDFLAGS@ -Wl,-soname,libRlapack.so.%%MAJORVER%% @BLAS_LIBS@ $(Rlapack_la_LIBADD)
  
  Rlapack_install: $(Rlapack_la) 
  	@$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
  	@$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rlapack_la) \
  	  "$(Rexeclibdir)/$(Rlapack_la)"
-+	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rlapack_la) libRlapack.so.%%MAJORVER%%
-+	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rlapack_la) libRlapack.so
++	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) libRlapack.so.%%MAJORVER%%
++	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) libRlapack.so.%%FULLVER%%
  
  install: installdirs
  	@$(SHELL) $(top_srcdir)/tools/copy-if-change $(lapack_la) "$(DESTDIR)$(Rexecmodulesdir)/$(lapack_la)"
- @USE_EXTERNAL_LAPACK_FALSE@	@$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rlapack_la) "$(DESTDIR)$(Rexeclibdir)/$(Rlapack_la)"
-+@USE_EXTERNAL_LAPACK_FALSE@	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) libRlapack.so.%%MAJORVER%%
-+@USE_EXTERNAL_LAPACK_FALSE@	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) libRlapack.so
- installdirs:
+@@ -124,11 +126,15 @@ install-strip-Rlapack:
  	@$(MKINSTALLDIRS) "$(DESTDIR)$(Rexecmodulesdir)"
  install-strip-Rlapack:
-@@ -110,6 +114,8 @@ install-strip: @USE_EXTERNAL_LAPACK_FALSE@ install-str
+ 	@$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rlapack_la) "$(DESTDIR)$(Rexeclibdir)/$(Rlapack_la)"
++	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) libRlapack.so.%%MAJORVER%%
++	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) libRlapack.so.%%FULLVER%%
+ 	@if test -n "$(STRIP_SHARED_LIB)"; then \
+ 	  $(STRIP_SHARED_LIB) "$(DESTDIR)$(Rexeclibdir)/$(Rlapack_la)"; \
+ 	fi
+ install-strip: @USE_EXTERNAL_LAPACK_FALSE@ install-strip-Rlapack
+ 	@$(SHELL) $(top_srcdir)/tools/copy-if-change $(lapack_la) "$(DESTDIR)$(Rexecmodulesdir)/$(lapack_la)"
++	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) libRlapack.so.%%MAJORVER%%
++	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) libRlapack.so.%%FULLVER%%
  	@if test -n "$(STRIP_SHARED_LIB)"; then \
  	  $(STRIP_SHARED_LIB) "$(DESTDIR)$(Rexecmodulesdir)/$(lapack_la)"; \
  	fi
-+	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rlapack_la) libRlapack.so.%%MAJORVER%%
-+	@cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rlapack_la) libRlapack.so
- uninstall:
- 	@rm -f "$(Rexecmodulesdir)/$(lapack_la)"
- 
diff --git a/math/R/files/patch-src_main_Makefile.in b/math/R/files/patch-src_main_Makefile.in
index ddc961a8ac69..92740d31f0e0 100644
--- a/math/R/files/patch-src_main_Makefile.in
+++ b/math/R/files/patch-src_main_Makefile.in
@@ -1,27 +1,20 @@
---- src/main/Makefile.in.orig	2020-05-05 02:47:09 UTC
+--- src/main/Makefile.in.orig	2024-05-01 21:07:24 UTC
 +++ src/main/Makefile.in
-@@ -105,13 +105,13 @@ R_bin_OBJECTS = Rmain.o @WANT_R_SHLIB_FALSE@$(OBJECTS)
- @WANT_R_SHLIB_TRUE@R_bin_LDADD = -lR @BLAS_SHLIB_TRUE@-lRblas
- @BUILD_LTO_FALSE@R_bin_DEPENDENCIES =@WANT_R_SHLIB_FALSE@ libR.a @USE_EXPORTFILES_TRUE@ $(top_builddir)/etc/R.exp
- 
--libR_la = libR$(R_DYLIB_EXT)
-+libR_la = libR$(R_DYLIB_EXT).%%FULLVER%%
- libR_la_OBJECTS = $(OBJECTS)
- libR_la_LIBADD =  $(MAIN_OBJS) $(EXTRA_STATIC_LIBS) $(EXTRA_LIBS) @WANT_R_SHLIB_TRUE@ @USE_EXPORTFILES_TRUE@ -Wl,-bE:$(top_builddir)/etc/R.exp
+@@ -115,7 +115,7 @@ libR_la_DEPENDENCIES = $(STATIC_LIBS) $(R_TZONE) @WANT
  libR_la_DEPENDENCIES = $(STATIC_LIBS) $(R_TZONE) @WANT_R_SHLIB_TRUE@ @USE_EXPORTFILES_TRUE@ $(top_builddir)/etc/R.exp
  
  ## The next is needed for macOS only at present
 -LIBR_LDFLAGS = @LIBR_LDFLAGS@
-+LIBR_LDFLAGS = -Wl,-soname,libR.so.4
++LIBR_LDFLAGS = @LIBR_LDFLAGS@ -Wl,-soname,libR.so.%%MAJORVER%%
  
  
  all: R
-@@ -201,6 +201,8 @@ install-bin: installdirs
+@@ -203,6 +203,8 @@ install-lib: installdirs
  install-lib: installdirs
  	@$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
  	@$(SHELL) $(top_srcdir)/tools/copy-if-change $(libR_la) "$(DESTDIR)$(Rexeclibdir)/$(libR_la)"
 +	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(libR_la) libR.so.%%MAJORVER%%
-+	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(libR_la) libR.so
++	@cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(libR_la) libR.so.%%FULLVER%%
  install-static: installdirs
  	@$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
  	@$(SHELL) $(top_srcdir)/tools/copy-if-change libR.a "$(DESTDIR)$(Rexeclibdir)/libR.a"
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index ec44182d1be8..6bd91016464f 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -189,15 +189,49 @@ lib/R/library/Matrix/doc/Intro2Matrix.pdf
 lib/R/library/Matrix/doc/Introduction.R
 lib/R/library/Matrix/doc/Introduction.Rnw
 lib/R/library/Matrix/doc/Introduction.pdf
-lib/R/library/Matrix/doc/SuiteSparse/AMD.txt
-lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD.txt
-lib/R/library/Matrix/doc/SuiteSparse/COLAMD.txt
-lib/R/library/Matrix/doc/SuiteSparse/SPQR.txt
-lib/R/library/Matrix/doc/SuiteSparse/SuiteSparse_config.txt
+lib/R/library/Matrix/doc/SuiteSparse/AMD/Doc/ChangeLog
+lib/R/library/Matrix/doc/SuiteSparse/AMD/Doc/License.txt
+lib/R/library/Matrix/doc/SuiteSparse/AMD/README.txt
+lib/R/library/Matrix/doc/SuiteSparse/CAMD/Doc/ChangeLog
+lib/R/library/Matrix/doc/SuiteSparse/CAMD/Doc/License.txt
+lib/R/library/Matrix/doc/SuiteSparse/CAMD/README.txt
+lib/R/library/Matrix/doc/SuiteSparse/CCOLAMD/Doc/ChangeLog
+lib/R/library/Matrix/doc/SuiteSparse/CCOLAMD/Doc/License.txt
+lib/R/library/Matrix/doc/SuiteSparse/CCOLAMD/README.txt
+lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD/Doc/ChangeLog
+lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD/Doc/License.txt
+lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD/README.txt
+lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD/SuiteSparse_metis/Changelog
+lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD/SuiteSparse_metis/LICENSE.txt
+lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD/SuiteSparse_metis/README.txt
+lib/R/library/Matrix/doc/SuiteSparse/COLAMD/Doc/ChangeLog
+lib/R/library/Matrix/doc/SuiteSparse/COLAMD/Doc/License.txt
+lib/R/library/Matrix/doc/SuiteSparse/COLAMD/README.txt
+lib/R/library/Matrix/doc/SuiteSparse/CXSparse/Doc/ChangeLog
+lib/R/library/Matrix/doc/SuiteSparse/CXSparse/Doc/License.txt
+lib/R/library/Matrix/doc/SuiteSparse/CXSparse/README.txt
+lib/R/library/Matrix/doc/SuiteSparse/ChangeLog
+lib/R/library/Matrix/doc/SuiteSparse/LICENSE.txt
+lib/R/library/Matrix/doc/SuiteSparse/README.md
+lib/R/library/Matrix/doc/SuiteSparse/SuiteSparse_config/README.txt
 lib/R/library/Matrix/doc/index.html
 lib/R/library/Matrix/doc/sparseModels.R
 lib/R/library/Matrix/doc/sparseModels.Rnw
 lib/R/library/Matrix/doc/sparseModels.pdf
+lib/R/library/Matrix/scripts/AMD.patch
+lib/R/library/Matrix/scripts/CAMD.patch
+lib/R/library/Matrix/scripts/CCOLAMD.patch
+lib/R/library/Matrix/scripts/CHOLMOD.patch
+lib/R/library/Matrix/scripts/COLAMD.patch
+lib/R/library/Matrix/scripts/CXSparse.patch
+lib/R/library/Matrix/scripts/SuiteSparse_config.patch
+lib/R/library/Matrix/scripts/api.patch
+lib/R/library/Matrix/scripts/disclaimer.txt
+lib/R/library/Matrix/scripts/rules.mk
+lib/R/library/Matrix/scripts/rules.sh
+lib/R/library/Matrix/scripts/sources.mk
+lib/R/library/Matrix/scripts/ssget.sh
+lib/R/library/Matrix/scripts/wall.patch
 lib/R/library/Matrix/external/CAex_slots.rda
 lib/R/library/Matrix/external/KNex_slots.rda
 lib/R/library/Matrix/external/USCounties_slots.rda
@@ -497,8 +531,24 @@ lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz
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 lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz
 lib/R/library/grDevices/afm/Helvetica.afm.gz
+lib/R/library/grDevices/afm/LICENSE.LPPL
 lib/R/library/grDevices/afm/MustRead.html
+lib/R/library/grDevices/afm/NimbusMonoPS-Bold.afm.gz
+lib/R/library/grDevices/afm/NimbusMonoPS-BoldItalic.afm.gz
+lib/R/library/grDevices/afm/NimbusMonoPS-Italic.afm.gz
+lib/R/library/grDevices/afm/NimbusMonoPS-Regular.afm.gz
+lib/R/library/grDevices/afm/NimbusRoman-Bold.afm.gz
+lib/R/library/grDevices/afm/NimbusRoman-BoldItalic.afm.gz
+lib/R/library/grDevices/afm/NimbusRoman-Italic.afm.gz
+lib/R/library/grDevices/afm/NimbusRoman-Regular.afm.gz
+lib/R/library/grDevices/afm/NimbusSans-Bold.afm.gz
+lib/R/library/grDevices/afm/NimbusSans-BoldItalic.afm.gz
+lib/R/library/grDevices/afm/NimbusSans-BoldOblique.afm.gz
+lib/R/library/grDevices/afm/NimbusSans-Italic.afm.gz
+lib/R/library/grDevices/afm/NimbusSans-Oblique.afm.gz
+lib/R/library/grDevices/afm/NimbusSans-Regular.afm.gz
 lib/R/library/grDevices/afm/README
+lib/R/library/grDevices/afm/StandardSymbolsPS.afm.gz
 lib/R/library/grDevices/afm/Symbol.afm.gz
 lib/R/library/grDevices/afm/Times-Bold.afm.gz
 lib/R/library/grDevices/afm/Times-BoldItalic.afm.gz
@@ -589,7 +639,6 @@ lib/R/library/grDevices/enc/ISOLatin7.enc
 lib/R/library/grDevices/enc/ISOLatin9.enc
 lib/R/library/grDevices/enc/KOI8-R.enc
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 lib/R/library/grDevices/enc/PDFDoc.enc
 lib/R/library/grDevices/enc/TeXtext.enc
 lib/R/library/grDevices/enc/WinAnsi.enc
@@ -1204,6 +1253,54 @@ lib/R/library/tools/html/00Index.html
 lib/R/library/tools/html/R.css
 lib/R/library/tools/libs/tools.so
 lib/R/library/translations/DESCRIPTION
+%%NLS%%lib/R/library/translations/ar/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/translations/ar/LC_MESSAGES/R-methods.mo
+%%NLS%%lib/R/library/translations/ar/LC_MESSAGES/R-parallel.mo
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+%%NLS%%lib/R/library/translations/ar/LC_MESSAGES/R-tcltk.mo
+%%NLS%%lib/R/library/translations/ar/LC_MESSAGES/R-tools.mo
+%%NLS%%lib/R/library/translations/ar/LC_MESSAGES/R-utils.mo
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+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/R-grid.mo
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+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/R-stats4.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/R-tcltk.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/R-tools.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/R-utils.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/R.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/RGui.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/grDevices.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/graphics.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/grid.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/methods.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/splines.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/stats.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/tcltk.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/tools.mo
+%%NLS%%lib/R/library/translations/ca/LC_MESSAGES/utils.mo
 %%NLS%%lib/R/library/translations/da/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/da/LC_MESSAGES/R-compiler.mo
 %%NLS%%lib/R/library/translations/da/LC_MESSAGES/R-grDevices.mo
@@ -1278,12 +1375,50 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/en@quot/LC_MESSAGES/tcltk.mo
 %%NLS%%lib/R/library/translations/en@quot/LC_MESSAGES/tools.mo
 %%NLS%%lib/R/library/translations/en@quot/LC_MESSAGES/utils.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-compiler.mo
 %%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-grDevices.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-graphics.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-grid.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-methods.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-splines.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-stats.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-stats4.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-tcltk.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-tools.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R-utils.mo
 %%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/R.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/RGui.mo
 %%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/grDevices.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/graphics.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/grid.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/methods.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/splines.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/stats.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/tcltk.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/tools.mo
+%%NLS%%lib/R/library/translations/en_GB/LC_MESSAGES/utils.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-grDevices.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-graphics.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-grid.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-methods.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-stats.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-stats4.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-tools.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/R-utils.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/R.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/RGui.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/grDevices.mo
 %%NLS%%lib/R/library/translations/es/LC_MESSAGES/graphics.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/stats.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/tcltk.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/tools.mo
+%%NLS%%lib/R/library/translations/es/LC_MESSAGES/utils.mo
 %%NLS%%lib/R/library/translations/fa/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/fa/LC_MESSAGES/R-utils.mo
 %%NLS%%lib/R/library/translations/fa/LC_MESSAGES/R.mo
@@ -1313,6 +1448,40 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/fr/LC_MESSAGES/tcltk.mo
 %%NLS%%lib/R/library/translations/fr/LC_MESSAGES/tools.mo
 %%NLS%%lib/R/library/translations/fr/LC_MESSAGES/utils.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/R-grDevices.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/R-graphics.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/R-stats.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/R-tools.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/R-utils.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/R.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/RGui.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/grDevices.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/graphics.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/stats.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/tools.mo
+%%NLS%%lib/R/library/translations/hi/LC_MESSAGES/utils.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-graphics.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-splines.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-stats.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-tcltk.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-tools.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R-utils.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/R.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/RGui.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/grDevices.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/graphics.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/grid.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/stats.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/tcltk.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/tools.mo
+%%NLS%%lib/R/library/translations/hu/LC_MESSAGES/utils.mo
+%%NLS%%lib/R/library/translations/id/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/it/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/it/LC_MESSAGES/R-compiler.mo
 %%NLS%%lib/R/library/translations/it/LC_MESSAGES/R-grDevices.mo
@@ -1344,6 +1513,7 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/R-graphics.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/R-grid.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/R-methods.mo
+%%NLS%%lib/R/library/translations/ja/LC_MESSAGES/R-parallel.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/R-splines.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/R-stats.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/R-stats4.mo
@@ -1356,6 +1526,7 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/graphics.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/grid.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/methods.mo
+%%NLS%%lib/R/library/translations/ja/LC_MESSAGES/parallel.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/splines.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/stats.mo
 %%NLS%%lib/R/library/translations/ja/LC_MESSAGES/tcltk.mo
@@ -1410,6 +1581,9 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/lt/LC_MESSAGES/tcltk.mo
 %%NLS%%lib/R/library/translations/lt/LC_MESSAGES/tools.mo
 %%NLS%%lib/R/library/translations/lt/LC_MESSAGES/utils.mo
+%%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/translations/ne/LC_MESSAGES/R.mo
+%%NLS%%lib/R/library/translations/ne/LC_MESSAGES/RGui.mo
 %%NLS%%lib/R/library/translations/nn/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/nn/LC_MESSAGES/R.mo
 %%NLS%%lib/R/library/translations/nn/LC_MESSAGES/RGui.mo
@@ -1445,6 +1619,7 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/R-graphics.mo
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/R-grid.mo
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/R-methods.mo
+%%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/R-parallel.mo
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/R-splines.mo
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats.mo
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats4.mo
@@ -1461,6 +1636,7 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/stats.mo
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/tcltk.mo
 %%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/tools.mo
+%%NLS%%lib/R/library/translations/pt_BR/LC_MESSAGES/utils.mo
 %%NLS%%lib/R/library/translations/ru/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/ru/LC_MESSAGES/R-compiler.mo
 %%NLS%%lib/R/library/translations/ru/LC_MESSAGES/R-grDevices.mo
@@ -1486,6 +1662,8 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/ru/LC_MESSAGES/tcltk.mo
 %%NLS%%lib/R/library/translations/ru/LC_MESSAGES/tools.mo
 %%NLS%%lib/R/library/translations/ru/LC_MESSAGES/utils.mo
+%%NLS%%lib/R/library/translations/sq/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/translations/sq/LC_MESSAGES/R.mo
 %%NLS%%lib/R/library/translations/tr/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/tr/LC_MESSAGES/R-stats.mo
 %%NLS%%lib/R/library/translations/tr/LC_MESSAGES/R-stats4.mo
@@ -1494,6 +1672,7 @@ lib/R/library/translations/DESCRIPTION
 %%NLS%%lib/R/library/translations/tr/LC_MESSAGES/R.mo
 %%NLS%%lib/R/library/translations/tr/LC_MESSAGES/RGui.mo
 %%NLS%%lib/R/library/translations/tr/LC_MESSAGES/graphics.mo
+%%NLS%%lib/R/library/translations/ur/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/zh_CN/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/translations/zh_CN/LC_MESSAGES/R-compiler.mo
 %%NLS%%lib/R/library/translations/zh_CN/LC_MESSAGES/R-grDevices.mo
@@ -1585,6 +1764,9 @@ lib/R/share/R/examples-header.R
 lib/R/share/R/nspackloader.R
 lib/R/share/R/tests-startup.R
 lib/R/share/Rd/macros/system.Rd
+lib/R/share/dictionaries/R_Rd_files.rds
+lib/R/share/dictionaries/R_manuals.rds
+lib/R/share/dictionaries/R_vignettes.rds
 lib/R/share/dictionaries/en_stats.rds
 lib/R/share/encodings/Adobe-glyphlist
 lib/R/share/encodings/character-sets