git: 306ace396259 - main - biology/biostar-tools: Update to 1.10.1_3

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=306ace396259a771b353a17bffd1e8465c2ac89d

commit 306ace396259a771b353a17bffd1e8465c2ac89d
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2024-02-16 13:42:11 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2024-02-16 13:42:11 +0000

    biology/biostar-tools: Update to 1.10.1_3
    
    Add sra-tools to metaport deps on aarch64
    Clean up pkg-desc
---
 biology/biostar-tools/Makefile  |  6 +++---
 biology/biostar-tools/distinfo  |  2 +-
 biology/biostar-tools/pkg-descr | 25 ++++++++++++++-----------
 3 files changed, 18 insertions(+), 15 deletions(-)

diff --git a/biology/biostar-tools/Makefile b/biology/biostar-tools/Makefile
index b8cca93134d8..8163303759cf 100644
--- a/biology/biostar-tools/Makefile
+++ b/biology/biostar-tools/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=	biostar-tools
 PORTVERSION=	1.10.1
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology python
 
 MAINTAINER=	jwb@FreeBSD.org
@@ -71,8 +71,8 @@ USES=		metaport python
 
 .include <bsd.port.pre.mk>
 
-# Allow pkg build on non-amd64 systems until sra-tools supports them
-.if ${ARCH} == amd64
+# sra-tools is only supported on specific architectures
+.if ${ARCH} == amd64 || ${ARCH} == aarch64
 RUN_DEPENDS+=	sra-tools>0:biology/sra-tools
 .endif
 
diff --git a/biology/biostar-tools/distinfo b/biology/biostar-tools/distinfo
index 2d706e980f0b..04755b578d3c 100644
--- a/biology/biostar-tools/distinfo
+++ b/biology/biostar-tools/distinfo
@@ -1 +1 @@
-TIMESTAMP = 1638373720
+TIMESTAMP = 1708090899
diff --git a/biology/biostar-tools/pkg-descr b/biology/biostar-tools/pkg-descr
index eaf4acea11eb..41a5f646b935 100644
--- a/biology/biostar-tools/pkg-descr
+++ b/biology/biostar-tools/pkg-descr
@@ -1,16 +1,19 @@
-Biostar-Tools is a metaport for installing all the tools necessary to work
-through the Biostar Handbook, except for bedGrapToBigWig, which has license
-restrictions.  If you need bedGraphToBigWig, run
+Biostar-Tools is a metaport for installing all the tools necessary to
+work through the Biostar Handbook, except for bedGrapToBigWig, which
+has license restrictions.  If you need bedGraphToBigWig, run
 
 	cd /usr/ports/biology/ucsc-userapps && make install clean
 
-The handbook instructs the user to install these tools mostly via bioconda,
-which then requires the user to activate the bioconda environment each time
-they want to use the tools.  This meta-package installs all of the tools
-except emboss to the default PATH so they just work without any special
-environment.  Emboss commands are installed to /usr/local/emboss/bin due to
-conflicts with other packages.
-
-You can also install conda packages on FreeBSD.  For details, see
+The handbook instructs the reader to install these tools mostly via
+bioconda, which then requires the user to activate the bioconda
+environment each time they want to use the tools.  You can also
+install conda packages on FreeBSD if you wish.  For details, see
 
 	/usr/ports/sysutils/linux-miniconda-installer/pkg-descr
+
+This meta-package installs all of the tools except emboss to the
+default PATH (normally /usr/local/bin) so they just work without any
+special environment.  Emboss commands are installed to
+/usr/local/emboss/bin due to conflicts with other packages.  Run
+"biostar-shell" to add the emboss commands to your PATH, and simply
+exit the shell to return your PATH to normal.