From nobody Tue Feb 06 12:57:44 2024 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4TTjvs3XPJz58x3m; Tue, 6 Feb 2024 12:57:45 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4TTjvs1Q5Pz4S1V; Tue, 6 Feb 2024 12:57:45 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1707224265; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=mOt8aY7Bw8Z/jXlSsjYPW6uLf350Havllnr0sL6cxZ4=; b=DHhixbzmgNW3VeARHzn1Zr8KX+gwlkskjoCEQN9OoijyFfdStTYRj7sWMVBl3dG8FD6vUp 7zWwL7REVQ4chTzavIS0hX/EMOKY4kbUISoS+LANp160XxVNGi31ie5xtlufb5oh4jTf8f rGiooImPO5SqNX7JIs+OngEdYImrQrspzjufZWExaB9IcFwjRurtq74Ed3EQhcFRV0+v/U /xlAx1icF//b0IHlLlLimzCwLJKeLsoowrHc7YJfZ5WK/lWCsG6xvW/Yr6Z/lDUfwu7TOY q+B2pcaEh6zYV2Y/YPu567Iuk/iilIsz4Ng1TqPuI1hz0TQ8fQZ1vJlwTNLy1w== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1707224265; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=mOt8aY7Bw8Z/jXlSsjYPW6uLf350Havllnr0sL6cxZ4=; b=ek2omGsQYAMdaEolhUNTKs87cCZ03mDCUU2AsYmszdvvFOFanKhmFf8jusAcHIIKAQe4Km lu8nhuPUX5Phx698R1iDeAn96sTmM44V388F4kZMfYsLpcy3C8OJcO1/oEXPudIYKNE/0V UXFkL7GApvYwh04hjllrSIfjH0LDt8IgcmmuA25uSdzvtUcSC/HF8n7du6/SV8xhD87/xx HrIKwKLd8CrKRXCrHjFTFfzw0mKUn3CNdiOGybMxbKfMlRBAqgPTJH+s1zekDmwdUO1Ie2 mNM8kS3Yv9/4WAgAvh4TzoLJpzXm1spRXFXoYxEoUxCWaxV+JRFiWzLl0ZjjGQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1707224265; a=rsa-sha256; cv=none; b=e/2sSWqIeA9fwqljlei1OItvcpjvzxhgnh8uUCrnoFSVmas/mFZpc4rHaJBC/dJ9Lb/avj HVGUNuWPeMNjV4V2ZVpnuBtuQ0OOEp2r+fQ9LOPpQBevz6B7a4skhnwW2nipsk/LpBZwVn vjP4hSwx2A49+73krr80TWfdc23xWaTmdrvVmfnBpqEHEcXZpBg+tFF0rL1CB+SfusPxkE 7k3KknL+7i7Rx17Erm7+UEZOUZHfzJ5guf1HOjs7VytTT01ZyOP37xHD8vG1cWBSsvkmNM pFGmgV+hX33APrcxcf3DllBMC1fhI8dRwa6VjEbRVNTzIbDUMZAIiolTwgs29A== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4TTjvs0Vp7zPbP; Tue, 6 Feb 2024 12:57:45 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 416Cvif2014083; Tue, 6 Feb 2024 12:57:44 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 416CviCd014080; Tue, 6 Feb 2024 12:57:44 GMT (envelope-from git) Date: Tue, 6 Feb 2024 12:57:44 GMT Message-Id: <202402061257.416CviCd014080@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 7c280eb4247d - main - biology/py-cutadapt: Update to 4.6 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 7c280eb4247df10ec0bebfbe6ffd6d42f36142fb Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=7c280eb4247df10ec0bebfbe6ffd6d42f36142fb commit 7c280eb4247df10ec0bebfbe6ffd6d42f36142fb Author: Jason W. Bacon AuthorDate: 2024-02-06 12:55:32 +0000 Commit: Jason W. Bacon CommitDate: 2024-02-06 12:55:32 +0000 biology/py-cutadapt: Update to 4.6 Numerous bug fixes and enhancements since 3.3 Changes: https://github.com/marcelm/cutadapt/tags PR: 276814 Reported by: wen --- biology/py-cutadapt/Makefile | 7 +++---- biology/py-cutadapt/distinfo | 6 +++--- 2 files changed, 6 insertions(+), 7 deletions(-) diff --git a/biology/py-cutadapt/Makefile b/biology/py-cutadapt/Makefile index f36d2982ee56..f762abfcee0c 100644 --- a/biology/py-cutadapt/Makefile +++ b/biology/py-cutadapt/Makefile @@ -1,6 +1,5 @@ PORTNAME= cutadapt -DISTVERSION= 3.3 -PORTREVISION= 1 +DISTVERSION= 4.6 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -13,8 +12,8 @@ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen==1.1:archivers/py-xopen@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}dnaio==0.5.1:biology/py-dnaio@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=1.6.0:archivers/py-xopen@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}dnaio>=1.2.0:biology/py-dnaio@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR} diff --git a/biology/py-cutadapt/distinfo b/biology/py-cutadapt/distinfo index 9ecb78238103..93bbf4b58753 100644 --- a/biology/py-cutadapt/distinfo +++ b/biology/py-cutadapt/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1615045047 -SHA256 (cutadapt-3.3.tar.gz) = cf502bd0df120d584524ea0e834b45135233c38089e900bd41c3d5cd41ee6eea -SIZE (cutadapt-3.3.tar.gz) = 294579 +TIMESTAMP = 1707060779 +SHA256 (cutadapt-4.6.tar.gz) = 924116f34569248035b16f58e73458ed4c0004e44823b80b07f4ab419272f591 +SIZE (cutadapt-4.6.tar.gz) = 250254