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Tue, 5 Sep 2023 02:51:43 GMT (envelope-from git) Date: Tue, 5 Sep 2023 02:51:43 GMT Message-Id: <202309050251.3852ph7E029614@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Joseph Mingrone Subject: git: 8a1ec0de6bd5 - main - biology/iqtree: Update to 2.2.2.7 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jrm X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 8a1ec0de6bd5a7f16bd4967023f46d50fcd13aed Auto-Submitted: auto-generated The branch main has been updated by jrm: URL: https://cgit.FreeBSD.org/ports/commit/?id=8a1ec0de6bd5a7f16bd4967023f46d50fcd13aed commit 8a1ec0de6bd5a7f16bd4967023f46d50fcd13aed Author: Joseph Mingrone AuthorDate: 2023-09-04 02:05:51 +0000 Commit: Joseph Mingrone CommitDate: 2023-09-05 02:45:37 +0000 biology/iqtree: Update to 2.2.2.7 Changes: https://github.com/iqtree/iqtree2/releases/tag/v2.2.2.7 Sponsored by: The FreeBSD Foundation --- biology/iqtree/Makefile | 12 ++++++------ biology/iqtree/distinfo | 8 +++++--- biology/iqtree/files/patch-CMakeLists.txt | 10 +++++----- 3 files changed, 16 insertions(+), 14 deletions(-) diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile index f6d1014747aa..fc5668b4005a 100644 --- a/biology/iqtree/Makefile +++ b/biology/iqtree/Makefile @@ -1,7 +1,6 @@ PORTNAME= iqtree DISTVERSIONPREFIX= v -DISTVERSION= 2.0.6 -PORTREVISION= 5 +DISTVERSION= 2.2.2.7 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org @@ -19,13 +18,14 @@ BROKEN_powerpc64= fails to build: GCC version must be at least 4.8! LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs -USES= cmake compiler:c++11-lang eigen:3 +USES= cmake eigen:3 USE_GITHUB= yes -GH_ACCOUNT= Cibiv -GH_PROJECT= IQ-TREE +GH_PROJECT= iqtree2 +GH_TUPLE= tothuhien:lsd2:26ba127:iqtree2/lsd2 PLIST_FILES= bin/iqtree -PORTEXAMPLES= example.cf example.nex example.phy models.nex +PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \ + models.nex tree.nwk OPTIONS_DEFINE= EXAMPLES diff --git a/biology/iqtree/distinfo b/biology/iqtree/distinfo index 66b7e2e26f98..d42a9dfcb32d 100644 --- a/biology/iqtree/distinfo +++ b/biology/iqtree/distinfo @@ -1,3 +1,5 @@ -TIMESTAMP = 1590834014 -SHA256 (Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz) = 64cdad4a9aff7cbeb27512c0127c4e85fb7f2a5dee51adc9109143fb6191a42e -SIZE (Cibiv-IQ-TREE-v2.0.6_GH0.tar.gz) = 5265191 +TIMESTAMP = 1693790511 +SHA256 (iqtree-iqtree2-v2.2.2.7_GH0.tar.gz) = 407a1a56d352ba9c2152a1d708cd29db872a41c252fbdc7acd8e0de0da8af008 +SIZE (iqtree-iqtree2-v2.2.2.7_GH0.tar.gz) = 6088089 +SHA256 (tothuhien-lsd2-26ba127_GH0.tar.gz) = 63226da0e326d9fc47c54e8e380d48e51e923ccc25bd7f286d49b9f49028d1c4 +SIZE (tothuhien-lsd2-26ba127_GH0.tar.gz) = 1079490 diff --git a/biology/iqtree/files/patch-CMakeLists.txt b/biology/iqtree/files/patch-CMakeLists.txt index 6bf4993090a9..d52f30670d91 100644 --- a/biology/iqtree/files/patch-CMakeLists.txt +++ b/biology/iqtree/files/patch-CMakeLists.txt @@ -1,9 +1,9 @@ ---- CMakeLists.txt.orig 2021-01-11 20:50:45 UTC +--- CMakeLists.txt.orig 2023-09-05 01:20:58 UTC +++ CMakeLists.txt -@@ -323,7 +323,7 @@ if (NOT IQTREE_FLAGS MATCHES "single") - - if(CLANG AND APPLE) - link_directories(${PROJECT_SOURCE_DIR}/libmac) +@@ -398,7 +398,7 @@ if (NOT IQTREE_FLAGS MATCHES "single") + else() + link_directories(${PROJECT_SOURCE_DIR}/libmac) + endif() - elseif (WIN32 OR UNIX) + elseif (WIN32 OR UNIX AND NOT ${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD") if (BINARY32)