From nobody Sat Oct 28 11:52:56 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4SHdFh4rZmz4ym9T; Sat, 28 Oct 2023 11:52:56 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4SHdFh3sgXz4YcD; Sat, 28 Oct 2023 11:52:56 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1698493976; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=2jo4TmOp3R0l1DYDKcEDDnVjvae988nIdx7wSN/rC+w=; b=QpyBB0unXu9YMSK3AzgfEZW/9KrPnni2j5muJoL7ZbUB619Sdv5ssmTstwc9kA7yEZvy47 XwsvTVnepmrG5Jfu65EMpkv33pmcTu6eBsJTJW76ZKklE1OpSOOhHnRaGz3uqehc2OouRl xYEc5eSLPCol2ykkJDbZ9ToEM0ZNTdY5+cdXjNuF0+ztwFj5SXC5trXHitHDasi5bqHzbO Gy4T1yb51nqwOtgIdM/OyQ0KFXUlsiMwdxNPlNbnr7gKZi7dcbrO3fz32urzvKySa0gSl/ gcYQ2tXgOZhAIo63iOrqucGnNObChh7Hrl8tjtAGODemIIc4YdF+25p94NJpRg== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1698493976; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=2jo4TmOp3R0l1DYDKcEDDnVjvae988nIdx7wSN/rC+w=; b=uLZr0rEVkwhGc9MyE/IoSfT3HsRAUHbGhv5f4T24X7hvZuPmicqLaVbVCfQUO5R5lPwytR 5Vj1uO7SHaxkOc9AtuWw11OhBwkEFEo/SZa4qc8lZzG0yixyeZ786giShudsroMYwq0koq AEHAWmrmn5YTG8YvQC9LbBwNFXDJJG/deszcS/95MfJecel+rcTTAWAnWYhI1cp/Gr8TL/ A8CC9J1YfDiDEypogLjc7NIFBLPIHnqNipLhMhnB3nVLohHz8RLnUYxUl35Ls8PYXfhd7u BWTYtxndUk9utsscCB/YuKNk63q9L4Exgd0Y/gdhDwr9wYNTkdckS/5pYbg3Eg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1698493976; a=rsa-sha256; cv=none; b=IANiLdE4RXc8b1aAgmLnuzl+Y1mdg0Sjk/VEarLWYzfNk9sPO7jkl1815Jg93pI+77pu9x ebR4kLo7npQ5QrSjOMs3CfFouKdIrCh4p7aRCtuoIwLfsiZTttYyE/l7i+piZTvGdznn1U EmEO83Nzni9uuJ4mtN0HchlM9BDxObSloESnQbsku1QK3EDRntbszDuAuh193jxxU8B2Lm c7qE3eJ3ZFtfvugYas2tz0ugD6Fu2zWJPwlL5MeXKQFhHvBzuRDYHhVPCpaGf+Y7vNUo3j LH51D56QvS0SBQ6bTWI1V4wUJEhn5zqBnsZJ1hV6iphv4k9/MVOeZvXPB4IzNQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4SHdFh2z4bzv9q; Sat, 28 Oct 2023 11:52:56 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 39SBqusw026638; Sat, 28 Oct 2023 11:52:56 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 39SBquAR026635; Sat, 28 Oct 2023 11:52:56 GMT (envelope-from git) Date: Sat, 28 Oct 2023 11:52:56 GMT Message-Id: <202310281152.39SBquAR026635@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: f20fa89b2c52 - main - biology/fasda: Update to 0.1.5 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: f20fa89b2c5271fcd7ff4c73e8944fb57267bd1e Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=f20fa89b2c5271fcd7ff4c73e8944fb57267bd1e commit f20fa89b2c5271fcd7ff4c73e8944fb57267bd1e Author: Jason W. Bacon AuthorDate: 2023-10-28 11:32:20 +0000 Commit: Jason W. Bacon CommitDate: 2023-10-28 11:32:20 +0000 biology/fasda: Update to 0.1.5 abundance: Update stringtie command to also produce gene-level abundances Output 0 for effective length for now to clearly indicate that it's invalid normalize: Add --debug option Updates for latest libxtend API Test -> Yeast-test Add Mouse-test suite with multiple mouse data options Streamline test scripts Changes: https://github.com/auerlab/fasda/releases --- biology/fasda/Makefile | 2 +- biology/fasda/distinfo | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/biology/fasda/Makefile b/biology/fasda/Makefile index 3c9823658748..de98149dbb09 100644 --- a/biology/fasda/Makefile +++ b/biology/fasda/Makefile @@ -1,5 +1,5 @@ PORTNAME= fasda -DISTVERSION= 0.1.4 +DISTVERSION= 0.1.5 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/fasda/distinfo b/biology/fasda/distinfo index 88743d780fa6..9ada38fe828f 100644 --- a/biology/fasda/distinfo +++ b/biology/fasda/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1691756858 -SHA256 (auerlab-fasda-0.1.4_GH0.tar.gz) = 8e1b1536ff3c551c16b6ddca543378343e055a9b067ef5038e2b2f1fb2e874b9 -SIZE (auerlab-fasda-0.1.4_GH0.tar.gz) = 65254 +TIMESTAMP = 1698151465 +SHA256 (auerlab-fasda-0.1.5_GH0.tar.gz) = 38ff2231259c67e814937f1032808b99fca24763d80dc7a6ad40cc65a518c085 +SIZE (auerlab-fasda-0.1.5_GH0.tar.gz) = 77908