From nobody Sat Oct 28 11:52:55 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4SHdFg4CB1z4ylvV; Sat, 28 Oct 2023 11:52:55 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4SHdFg39JCz4YlG; Sat, 28 Oct 2023 11:52:55 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1698493975; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=JfdCSUD1z5V6ZrkUkeujFzzhRpVoyso2EUM5seI/8PE=; b=DowcXObExl33pdCbD3EhA2LeM2USKtjZBcMENUz//Ufdbks/N6kb8fNCx4AK4qOvzhGkP1 lMoTaAsLXhvl0yuCJYxTjtI1eKfN8jQVS5fzcNjsLNG/oYLuKIpGtBIJf4zhkZtnHIj4G6 HHznhG0kh3MWtfX40I2Fzc2MmG3fiWoUKL6kpUijwMPSELJ8SxZHxWZ8TZMqyqJfTj2Bgn 54O9fi+TOxXtE9bpVprpmxPUSaroVVh0f+HTfaytodPBmOv0B9oxX5NxgXWRrhtPh5hloa 00CzMUaUmdMo7Sqg2Yn2e6MwdkP9ezerBLso9ml8iy80WtzC9/yi4za6GdXabw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1698493975; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=JfdCSUD1z5V6ZrkUkeujFzzhRpVoyso2EUM5seI/8PE=; b=lTBN5pWH/YgtUmJKxL267ak6cWpNK1bMKexY37y5UqagnuMgh1fXrEAxHB3u4D6ChdjzI3 SuSAFWArpuFutsgJxywjRzSCXYPJfqMO4t/6CizCOquG9Gkz81VE2WByiZ+32oGHN8J37y YnjEmV86e8FEoCjm7wA0yENuHHHFDU8KClUTHZzD9qmrZvgzJ03lI9zAkX1MDsmMYKwAR5 O060mAv/rYD1kAe5QIV+tqXIN/xxKcaCj++l1WvToF746zAyPw4FLqhDNOd80cavIrULRE ghEsU9EDKROlF2EVoo2+5Jj8Fc0gtnYMSfX0qSPJlLFyUorFdD+cBJYoy/GD+Q== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1698493975; a=rsa-sha256; cv=none; b=LfN4Gj8uwdvNzSG0DplAiMq/OSjpYgheQ8XV/H0beKASmtFSFg8/SCqh5kRlakSWC8UKGt mOHJ0iaDaabUtv69JjSM5H6zplyoc3bhUFN/dxZx4MwZqHByg64IA25KJ5KirkDhKjKi8S mXFdoJXAhJkcMlHANV3GiCGf8ucieANFSejCghGOjGuWGDlwC0tEccC63DPJXvvtBMaZEi dkJZFYOGP/hvSdH1UjdTqPmkVxFzbuw/oR4d7/jgKmaVsXzNSw/OezxhD/6HUIvQNh4KqZ UrgoQXE4PZbJl//yCN4DbJ/MIhqLTzKkrD2Io7UmN/hbxnKgLSQ1L+axNf+JgA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4SHdFg1xzGzvbp; Sat, 28 Oct 2023 11:52:55 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 39SBqtln026596; Sat, 28 Oct 2023 11:52:55 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 39SBqt6A026593; Sat, 28 Oct 2023 11:52:55 GMT (envelope-from git) Date: Sat, 28 Oct 2023 11:52:55 GMT Message-Id: <202310281152.39SBqt6A026593@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 560a0d850d4d - main - biology/biolibc: Update to 0.2.6 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 560a0d850d4d2cd06b3acff4e4c66f42c1e628a8 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=560a0d850d4d2cd06b3acff4e4c66f42c1e628a8 commit 560a0d850d4d2cd06b3acff4e4c66f42c1e628a8 Author: Jason W. Bacon AuthorDate: 2023-10-28 11:21:35 +0000 Commit: Jason W. Bacon CommitDate: 2023-10-28 11:21:35 +0000 biology/biolibc: Update to 0.2.6 Updates for libxtend 0.2.0 API Add full list of functions to biolibc(3) man page Other documentation improvements Changes: https://github.com/auerlab/biolibc/releases --- biology/biolibc/Makefile | 2 +- biology/biolibc/distinfo | 6 +++--- biology/biolibc/pkg-plist | 3 +++ 3 files changed, 7 insertions(+), 4 deletions(-) diff --git a/biology/biolibc/Makefile b/biology/biolibc/Makefile index e107ad437a58..af8a8764ef5d 100644 --- a/biology/biolibc/Makefile +++ b/biology/biolibc/Makefile @@ -1,5 +1,5 @@ PORTNAME= biolibc -DISTVERSION= 0.2.5 +DISTVERSION= 0.2.6 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/biolibc/distinfo b/biology/biolibc/distinfo index 11c338872a43..5cf48814bfd6 100644 --- a/biology/biolibc/distinfo +++ b/biology/biolibc/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1691785366 -SHA256 (auerlab-biolibc-0.2.5_GH0.tar.gz) = 5273dbf4e5135ac8f11e503c3ef516ec1c73906b1ec196a0a28606d88d3d394a -SIZE (auerlab-biolibc-0.2.5_GH0.tar.gz) = 141426 +TIMESTAMP = 1698064273 +SHA256 (auerlab-biolibc-0.2.6_GH0.tar.gz) = d3807734b6e615e7655d86591778784f8360fc30c37a0beff54212193d3c3dd0 +SIZE (auerlab-biolibc-0.2.6_GH0.tar.gz) = 147823 diff --git a/biology/biolibc/pkg-plist b/biology/biolibc/pkg-plist index a5a415d739ef..ef546c985a07 100644 --- a/biology/biolibc/pkg-plist +++ b/biology/biolibc/pkg-plist @@ -240,6 +240,7 @@ man/man3/bl_align_map_seq_sub.3.gz man/man3/bl_align_set_max_mismatch_percent.3.gz man/man3/bl_align_set_min_match.3.gz man/man3/bl_bed_check_order.3.gz +man/man3/bl_bed_gff3_cmp.3.gz man/man3/bl_bed_gff_cmp.3.gz man/man3/bl_bed_read.3.gz man/man3/bl_bed_set_block_count.3.gz @@ -430,6 +431,8 @@ man/man3/bl_sam_copy_header.3.gz man/man3/bl_sam_fclose.3.gz man/man3/bl_sam_fopen.3.gz man/man3/bl_sam_free.3.gz +man/man3/bl_sam_gff3_cmp.3.gz +man/man3/bl_sam_gff3_overlap.3.gz man/man3/bl_sam_gff_cmp.3.gz man/man3/bl_sam_gff_overlap.3.gz man/man3/bl_sam_init.3.gz