From nobody Tue Mar 21 12:54:56 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Pgs5D5vtxz40Gxq; Tue, 21 Mar 2023 12:54:56 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Pgs5D5MJWz4KfR; Tue, 21 Mar 2023 12:54:56 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1679403296; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=w2H5u63vPwpIFuDssagABsaWKj7QgKQo5X/olM7gRqs=; b=A+bOOddY7EHfWn2FM4awDhr5Z5XIhMcj9mFcGoOBglbANYLwkDGSG+akhC0nDYVXHc9enw 0ayArNiiS+2/mcljTgpUcVKHmKOz0u3w0B1/fve7H9Xhbj6SHCZVBjFt/cFxU01LXqFiGk 6DU3dqQcqWLTq/ScDkTpJEYoB8uBUOpn+4xLLYfvmEqyPTZ8EnnlrJVxQjD2IA7WfcbiMF Mp4GDesA4klBWuPm+hS7UJqjlnNjJc/QOznMmqKi8pRHaIqVYcDChQUP701NpaCwlkxROf IvAmdyx/uis4ntO/3Oez8n7zAg4lfdBsgQaKzGMhPqpMMK+sxRYwsuNuY3tcOw== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1679403296; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=w2H5u63vPwpIFuDssagABsaWKj7QgKQo5X/olM7gRqs=; b=ZJazISngyMHeONUtzgoSi0rXdo1GDDFUwYBDNSQTHKwScUDHo6Mmy34+79r/WJ5Euvb9+c Z2OPotvak4p7XnjhqhgygHEkqzz0OcAbDLfNLnRlQiOSi/9lD8WZD7MwolkrkoQVGyw1QH xc9hEOT4gUyKmiX5i8uh1uQiOKGg50p5gv41VlNZuyjeVUANWtgX/1WWPIF6eXBAIymt6P pi6by7pahlYPsPsFt6mzkU5sm5IrfrwWVoIVS1/zAUZuDIuebs6LHfoUo0gqDgbO47Dejt T/y1ABQmpqHPyG8YdOdLbQXUFeCRgL3ATUp/OntQVqVkVRUuhlVsVAK4knEvdA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1679403296; a=rsa-sha256; cv=none; b=kxYh0peHlL2joXIBYvRn++PrHLKgAn1+E/Hp4b4tBvqsNmAiJkxF6avHAE0ZALHRtXOVBI cbmDYSGb46cfXz23frrVCL2I0G7c4USpPKNFEWyxz6OqhZJJEjpYOoLqZynG1OeiRcMvqs n6yed5OZVzd9sWCc3scH4cCaypN8qqdclgNZ1mYhA7C541v1rgDim2Hs6bAjy0tN+rSZgn V+Rjp/BG9Ub/iHb2PtNgkX3kof94OXRUbGQJJKJXWi2qPpcivpBwDvL/kiWPFmVgjIALn9 mjj2FpstFCPqtUhQ9YhZf/Tphdaz9T8RuuUpZfDWiiuPE4S9ZW/hW1OSCiQVIw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Pgs5D4Ptnz1BwM; Tue, 21 Mar 2023 12:54:56 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 32LCsuGP077376; Tue, 21 Mar 2023 12:54:56 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 32LCsukV077375; Tue, 21 Mar 2023 12:54:56 GMT (envelope-from git) Date: Tue, 21 Mar 2023 12:54:56 GMT Message-Id: <202303211254.32LCsukV077375@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Robert Clausecker Subject: git: bd71c9d3c67e - main - biology/seqkit: fix build on riscv64 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: fuz X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: bd71c9d3c67e00fa60e2c853855db76ba43e4500 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by fuz: URL: https://cgit.FreeBSD.org/ports/commit/?id=bd71c9d3c67e00fa60e2c853855db76ba43e4500 commit bd71c9d3c67e00fa60e2c853855db76ba43e4500 Author: Robert Clausecker AuthorDate: 2023-03-17 17:29:20 +0000 Commit: Robert Clausecker CommitDate: 2023-03-21 12:53:48 +0000 biology/seqkit: fix build on riscv64 Bump golang.org/x/sys dependency to a version new enough to support riscv64-freebsd. Sponsored by: Berliner Linux User Group e.V. Approved by: yuri (maintainer) Differential Revision: https://reviews.freebsd.org/D39154 --- biology/seqkit/Makefile | 7 +++++++ biology/seqkit/distinfo | 4 +++- 2 files changed, 10 insertions(+), 1 deletion(-) diff --git a/biology/seqkit/Makefile b/biology/seqkit/Makefile index f64ae1af9267..3b370c32bded 100644 --- a/biology/seqkit/Makefile +++ b/biology/seqkit/Makefile @@ -1,6 +1,7 @@ PORTNAME= seqkit DISTVERSIONPREFIX= v DISTVERSION= 2.4.0 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org @@ -11,12 +12,18 @@ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE USES= go:modules +USE_GITHUB= nodefault +GH_TUPLE= golang:sys:v0.6.0:sys GO_MODULE= github.com/shenwei356/seqkit/v2 GO_TARGET= ./${PORTNAME} PLIST_FILES= bin/${PORTNAME} +pre-patch: + ${RM} -r ${WRKSRC}/vendor/golang.org/x/sys + ${LN} -s ${WRKDIR}/sys-* ${WRKSRC}/vendor/golang.org/x/sys + do-test: # from https://bioinf.shenwei.me/seqkit/benchmark/ @cd ${WRKSRC}/tests && \ ${GO_WRKDIR_BIN}/seqkit stat *.fa diff --git a/biology/seqkit/distinfo b/biology/seqkit/distinfo index 75736a5f4b6e..3c8be3fd3563 100644 --- a/biology/seqkit/distinfo +++ b/biology/seqkit/distinfo @@ -1,5 +1,7 @@ -TIMESTAMP = 1679088879 +TIMESTAMP = 1679152309 SHA256 (go/biology_seqkit/seqkit-v2.4.0/v2.4.0.mod) = b2e9bfdf3899c8c4f9a736e0a18599ec36784db188fbce8c4dc1e578a7bfe2f8 SIZE (go/biology_seqkit/seqkit-v2.4.0/v2.4.0.mod) = 2391 SHA256 (go/biology_seqkit/seqkit-v2.4.0/v2.4.0.zip) = 31ac20c6354ff852b9cc3c5506e48154cbe76605e3f8961a7043f76533cee231 SIZE (go/biology_seqkit/seqkit-v2.4.0/v2.4.0.zip) = 33905729 +SHA256 (go/biology_seqkit/seqkit-v2.4.0/golang-sys-v0.6.0_GH0.tar.gz) = b4f6d17c7a128f76169964b437cb66b3f2dbf9a33361928ec19dfecf7b03fc54 +SIZE (go/biology_seqkit/seqkit-v2.4.0/golang-sys-v0.6.0_GH0.tar.gz) = 1434234