From nobody Tue Mar 07 17:29:35 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4PWMrc0Rd6z3wQ4d; Tue, 7 Mar 2023 17:29:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4PWMrb716qz3CmF; Tue, 7 Mar 2023 17:29:35 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1678210176; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=HCDQTA8UBuDlMUcnViDSn4cv9MUin5h5d5l1V4xo57w=; b=gzRQB0skDQDr4nt/Gmg1PxCjFe8rDVhpRjjpeybWy7Ddywlzv+Tnzq72rNXBig5Lp+SY88 TXYODf8bRZi9ziKrlKHS/PNIG+LbUsk17Q3a1IlATBeRTynlJzQ+4Z1nGpxoGBEQcY21wf IOgiAIskjou40Bzkb7/KnU316dbb10uMJj3C6opOAWEP0W+EY56vCqvslomQDTVYHTNbZC erjoHTOy2vI9ozmGSMo+wghZF2ZG69TyeHdv0roWXUKCVr0rYKZvKohMy207Hh2EIkEntf YHMpGJCUMs/l51UCio1wef1myTtn8jJj4N0ZVW+QP85L3a7xwSxFaa8lLj68EQ== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1678210176; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=HCDQTA8UBuDlMUcnViDSn4cv9MUin5h5d5l1V4xo57w=; b=fgNw1QnsBEREsPuRDKlYgHXnDe1QBJMIVeTYwf0VfNIAweFoLQArWoozOCCJmSDZeej8ho 60EWcmQzTb7h6iQqiDlCmc2sRooxJBrIffHUZYswQnIDhX1OiOO3YRlQH7lmoNJsGLX11K P8E3v22qcGXWr+ygyWxcCRv6E3QkMa5PDJY3k3xl07brtmqNYgfanwMZsXYPNBH1OTR/48 AkPdE/9oqbdleCfqoZrT7CrBF3ZUOIhlx34gkXrG3b9/hqEPWxiykjykTVvjyQD73iuzZF oRrMkYsoPb0xYZoVkduVDtMMSHJ9pga2ZU3AJavGBWS8a3DbTf7M+8p6EUXE2w== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1678210176; a=rsa-sha256; cv=none; b=ptxTKrRdM4PPp9HjRm7FLC+ssYC5WawtWmOuXsVvLRb8r2UIcfXlmSBv1poznI5Qk9n7pg PK6tKfPn6V83sUmegKWEDRkZkYYHpkKJilHA2iRBUbZGLMI5fC877iZC64Cl7OVyyNqu4/ EVvFWUu7rLncC3vP8HfOWvypEybOxMAsU5DKqU76cjWk9khYRlmQRg5MVdGXLn7TquvA4T cCpY64xPw/BnTag0sxL8FvzlTohO19H8K/oy5TnH/auVp5dOeefwHee+EinPSIgdxux5Kf M01p9QTJKI1x8biMx9IvjDYN624oerAcCKW20YGpEpv9mAYsvyFwnqn0yTlEgA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4PWMrb63TLzsYX; Tue, 7 Mar 2023 17:29:35 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 327HTZPf073831; Tue, 7 Mar 2023 17:29:35 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 327HTZIG073830; Tue, 7 Mar 2023 17:29:35 GMT (envelope-from git) Date: Tue, 7 Mar 2023 17:29:35 GMT Message-Id: <202303071729.327HTZIG073830@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: d89248272808 - main - biology/fastx-toolkit: Unbreak build on 14-CURRENT List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: d89248272808e4a28957b7becb7dd8329bb424f6 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=d89248272808e4a28957b7becb7dd8329bb424f6 commit d89248272808e4a28957b7becb7dd8329bb424f6 Author: Jason W. Bacon AuthorDate: 2023-03-07 17:28:13 +0000 Commit: Jason W. Bacon CommitDate: 2023-03-07 17:28:13 +0000 biology/fastx-toolkit: Unbreak build on 14-CURRENT Remove developer warning flags, including -Werror causing build failure --- biology/fastx-toolkit/Makefile | 3 ++- biology/fastx-toolkit/distinfo | 1 + biology/fastx-toolkit/files/patch-configure.ac | 10 ++++++++++ 3 files changed, 13 insertions(+), 1 deletion(-) diff --git a/biology/fastx-toolkit/Makefile b/biology/fastx-toolkit/Makefile index 186707811d00..178e25f12f0c 100644 --- a/biology/fastx-toolkit/Makefile +++ b/biology/fastx-toolkit/Makefile @@ -1,5 +1,6 @@ PORTNAME= fastx_toolkit -PORTVERSION= 0.0.14 +DISTVERSION= 0.0.14 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/fastx-toolkit/distinfo b/biology/fastx-toolkit/distinfo index edf281a52f1e..9a57875c9b88 100644 --- a/biology/fastx-toolkit/distinfo +++ b/biology/fastx-toolkit/distinfo @@ -1,2 +1,3 @@ +TIMESTAMP = 1678210010 SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = 259576 diff --git a/biology/fastx-toolkit/files/patch-configure.ac b/biology/fastx-toolkit/files/patch-configure.ac new file mode 100644 index 000000000000..e3a18a3e1838 --- /dev/null +++ b/biology/fastx-toolkit/files/patch-configure.ac @@ -0,0 +1,10 @@ +--- configure.ac.orig 2023-03-07 17:18:12 UTC ++++ configure.ac +@@ -31,7 +31,6 @@ dnl fi + PKG_CHECK_MODULES([GTEXTUTILS],[gtextutils]) + + dnl --enable-wall +-EXTRA_CHECKS="-Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror" + AC_ARG_ENABLE(wall, + [ --enable-wall Enable many common GCC warnings (-Wall,-Wextra, -Werror etc., default enabled)], + [case "${enableval}" in