git: ff57c60617fb - main - biology/atac-seq: Update to 0.1.1
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Date: Thu, 12 Jan 2023 19:00:04 UTC
The branch main has been updated by jwb:
URL: https://cgit.FreeBSD.org/ports/commit/?id=ff57c60617fbb592629afa7684fb9ee1562d8344
commit ff57c60617fbb592629afa7684fb9ee1562d8344
Author: Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2023-01-12 18:58:57 +0000
Commit: Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2023-01-12 19:00:03 +0000
biology/atac-seq: Update to 0.1.1
Fix dependency: bowtie -> bowtie2
Add www/webbrowser for portable FastQC report viewing
---
biology/atac-seq/Makefile | 7 ++++---
biology/atac-seq/distinfo | 2 +-
2 files changed, 5 insertions(+), 4 deletions(-)
diff --git a/biology/atac-seq/Makefile b/biology/atac-seq/Makefile
index 6cc3e69e2535..a0da032ee1b0 100644
--- a/biology/atac-seq/Makefile
+++ b/biology/atac-seq/Makefile
@@ -1,5 +1,5 @@
PORTNAME= atac-seq
-DISTVERSION= 0.1.0
+DISTVERSION= 0.1.1
CATEGORIES= biology python
MASTER_SITES= # empty
@@ -15,12 +15,13 @@ RUN_DEPENDS= sra-tools>0:biology/sra-tools \
${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR} \
biolibc-tools>0:biology/biolibc-tools \
bwa>0:biology/bwa \
- bowtie2>0:biology/bowtie \
+ bowtie2>0:biology/bowtie2 \
samtools>0:biology/samtools \
igv>0:biology/igv \
${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR} \
fasda>0:biology/fasda \
- peak-classifier>0:biology/peak-classifier
+ peak-classifier>0:biology/peak-classifier \
+ webbrowser>0:www/webbrowser
USES= metaport python
diff --git a/biology/atac-seq/distinfo b/biology/atac-seq/distinfo
index 8bf439ee9d9b..79cf14b6de7f 100644
--- a/biology/atac-seq/distinfo
+++ b/biology/atac-seq/distinfo
@@ -1 +1 @@
-TIMESTAMP = 1673480732
+TIMESTAMP = 1673549889