From nobody Thu Jan 05 23:21:37 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Np2Xx5xkVz2qm5t; Thu, 5 Jan 2023 23:21:37 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Np2Xx5XM6z3t8n; Thu, 5 Jan 2023 23:21:37 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1672960897; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=joZpAvSg0X73CFpcs7IqviCU7/K7R9cj6Gwf582Ljts=; b=LBYv0me1Fz95Xh6UIwXuyNfBGEMIaTM0CKqeUPn5yid8/RuySjKZcVzor0Of25Zq7mzfBG Ay4fijA/vq3qhZtxv+AlBAw27F7AzB/257julWYBYhPm2Arseo2LcmEcOXyaYQ2XHDYsTD 69Ohyc4JM482iIoJ8B0LFB7veyXkZzT0l+s2jseMSOa1WA9It6SrQ3Q3rh5CfSX1o+6mzo JaIRbrndB5KqoFrxvGdl5ae0tvJ//cB3dJAHsQkwQRX5beEEm46iUNs0MJAFkEVZY2uLhu 9hY4m6TuwphwwEzfcx5hU8lDpVwT41eBMXDi7Xu9irp5zWyAXULqo7eqNRqdPA== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1672960897; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=joZpAvSg0X73CFpcs7IqviCU7/K7R9cj6Gwf582Ljts=; b=e0HEV4PsI1tNK85Vm37cMjSfIoI75I9bkuj7s8IyH3bmJ5rUUNjbdFMWdAymH2xkzEbT4X g63Jd2+urhKyj+sW2JuzbP3GNZDokd4tOfI6IvZMhPUja9usfjduehHjuPe1RVncjp6K7j lD454zQNSJVdMguCrfBN3EmoAU5GzycQs3Didp/z4MENwVNzK1n61elvLNVoxcvWvhBl9F NAEAEQp3Mrs7BewMXR6cpxWdQsGprqCSifKpqbEg6W8hkqEZtUmudjC2+kYO9/oEg87cGW O21ODVA52uRgY/o4ONSct8DrwnxDRUUNNPCA/XAX+VvRPXj/iOtOtTD2pkyRBQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1672960897; a=rsa-sha256; cv=none; b=DhnLO82wD5HYXWg8dTgXCnt3CfzhhafQyb4HLLxzFeAyrpBlfD0AUj02mEvTlbC1zDpEdK BD6UKnMQmk4RpIFM8GGt19dpR66xKsiEGCKBSsRMtjlMGiY8SOfq+clCA9Qby5PcpM9McV NMULuwiXtAj8e0qANlQJyYVAphzjG5L5eajS3EeVUsAhi4WLtdElAXDNkyvOieik4RM/FU /5INZmc45oTJshDb4t03QlAy1Qq3KTh4WdOCjDyuxGGAN5K/nL0OBUkAm7AcND/jZAo7bQ 9R9wBQ4a+z0rvSLxwes4B66FIarwJCSeFe7+MKSbBwuHqbK4g+QHiP0aQK+8AA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Np2Xx4ZQ4z17Yf; Thu, 5 Jan 2023 23:21:37 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 305NLbUE004662; Thu, 5 Jan 2023 23:21:37 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 305NLblH004661; Thu, 5 Jan 2023 23:21:37 GMT (envelope-from git) Date: Thu, 5 Jan 2023 23:21:37 GMT Message-Id: <202301052321.305NLblH004661@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: adfc9433b02c - main - biology/bcftools: Update to 1.16 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: adfc9433b02c9fbd48a51de471dc4f43a22d240f Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=adfc9433b02c9fbd48a51de471dc4f43a22d240f commit adfc9433b02c9fbd48a51de471dc4f43a22d240f Author: Jason W. Bacon AuthorDate: 2023-01-05 23:19:22 +0000 Commit: Jason W. Bacon CommitDate: 2023-01-05 23:19:22 +0000 biology/bcftools: Update to 1.16 New plugin variant-distance to annotate records with distance to the nearest variant Numerous minor enhancements and bug fixes Changes: https://github.com/samtools/bcftools/releases --- biology/bcftools/Makefile | 2 +- biology/bcftools/distinfo | 6 +++--- biology/bcftools/pkg-plist | 1 + 3 files changed, 5 insertions(+), 4 deletions(-) diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile index fcea2008869c..0f6c3ba013e0 100644 --- a/biology/bcftools/Makefile +++ b/biology/bcftools/Makefile @@ -1,5 +1,5 @@ PORTNAME= bcftools -PORTVERSION= 1.15 +PORTVERSION= 1.16 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/bcftools/distinfo b/biology/bcftools/distinfo index 7f2539d1f09b..0ff5fb7eef59 100644 --- a/biology/bcftools/distinfo +++ b/biology/bcftools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1645831748 -SHA256 (samtools-bcftools-1.15_GH0.tar.gz) = 6b263270c62b156d2604150ca7e64b06a80282e049759b2668de24cbce1b1946 -SIZE (samtools-bcftools-1.15_GH0.tar.gz) = 3347901 +TIMESTAMP = 1672094717 +SHA256 (samtools-bcftools-1.16_GH0.tar.gz) = c44c85a04e058e1f1eceeb712106031100bbd700b8ff3f623f7ff872469a4ba3 +SIZE (samtools-bcftools-1.16_GH0.tar.gz) = 3432435 diff --git a/biology/bcftools/pkg-plist b/biology/bcftools/pkg-plist index 11f94eafff86..0a24964f9656 100644 --- a/biology/bcftools/pkg-plist +++ b/biology/bcftools/pkg-plist @@ -43,5 +43,6 @@ libexec/bcftools/tag2tag.so libexec/bcftools/trio-dnm2.so libexec/bcftools/trio-stats.so libexec/bcftools/trio-switch-rate.so +libexec/bcftools/variant-distance.so libexec/bcftools/variantkey-hex.so man/man1/bcftools.1.gz