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Sat, 23 Dec 2023 17:28:39 GMT (envelope-from git) Date: Sat, 23 Dec 2023 17:28:39 GMT Message-Id: <202312231728.3BNHSdxK074878@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Joseph Mingrone Subject: git: 3b90027c760a - main - biology/hyphy: Update to 2.5.58 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jrm X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 3b90027c760a3591b2757fab96ab0e04298c62a9 Auto-Submitted: auto-generated The branch main has been updated by jrm: URL: https://cgit.FreeBSD.org/ports/commit/?id=3b90027c760a3591b2757fab96ab0e04298c62a9 commit 3b90027c760a3591b2757fab96ab0e04298c62a9 Author: Joseph Mingrone AuthorDate: 2023-12-23 17:15:10 +0000 Commit: Joseph Mingrone CommitDate: 2023-12-23 17:28:25 +0000 biology/hyphy: Update to 2.5.58 Changes: https://github.com/veg/hyphy/releases/tag/2.5.58 Sponsored by: The FreeBSD Foundation --- biology/hyphy/Makefile | 2 +- biology/hyphy/distinfo | 6 +++--- biology/hyphy/pkg-plist | 2 ++ 3 files changed, 6 insertions(+), 4 deletions(-) diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile index ce766fc506a9..0f614818b254 100644 --- a/biology/hyphy/Makefile +++ b/biology/hyphy/Makefile @@ -1,5 +1,5 @@ PORTNAME= hyphy -DISTVERSION= 2.5.57 +DISTVERSION= 2.5.58 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo index c505ef07992a..53b75fc008b5 100644 --- a/biology/hyphy/distinfo +++ b/biology/hyphy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1699999920 -SHA256 (veg-hyphy-2.5.57_GH0.tar.gz) = 5412331ff40b58fa69f34ad67f3431e662e9c2002f5d035f47225f26b8e3533c -SIZE (veg-hyphy-2.5.57_GH0.tar.gz) = 5583575 +TIMESTAMP = 1703351280 +SHA256 (veg-hyphy-2.5.58_GH0.tar.gz) = f448d4a95bdb356eb6b1384b0c507a79f152511ad76bb67170ab5b8eb2798231 +SIZE (veg-hyphy-2.5.58_GH0.tar.gz) = 5593070 diff --git a/biology/hyphy/pkg-plist b/biology/hyphy/pkg-plist index 9f46ee3e53d6..3491aaa1b191 100644 --- a/biology/hyphy/pkg-plist +++ b/biology/hyphy/pkg-plist @@ -147,6 +147,7 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/ModelTest.bf %%DATADIR%%/TemplateBatchFiles/MolClockAllRoots.bf %%DATADIR%%/TemplateBatchFiles/MolecularClock.bf +%%DATADIR%%/TemplateBatchFiles/MSS-joint-fitter.bf %%DATADIR%%/TemplateBatchFiles/MSS-selector-2.bf %%DATADIR%%/TemplateBatchFiles/MSS-selector.bf %%DATADIR%%/TemplateBatchFiles/NeighborJoining.bf @@ -191,6 +192,7 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf +%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/error-filter.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf