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ESMTPS id 4SsCbP73Dgz25p; Fri, 15 Dec 2023 15:20:49 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 3BFFKnJc059609; Fri, 15 Dec 2023 15:20:49 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 3BFFKnBT059606; Fri, 15 Dec 2023 15:20:49 GMT (envelope-from git) Date: Fri, 15 Dec 2023 15:20:49 GMT Message-Id: <202312151520.3BFFKnBT059606@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Thierry Thomas Subject: git: 2e9ed05a8d54 - main - science/code_saturne: upgrade to v8.1.0 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: thierry X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2e9ed05a8d545cf97f2ad1f8430d0f8619c2bbf4 Auto-Submitted: auto-generated The branch main has been updated by thierry: URL: https://cgit.FreeBSD.org/ports/commit/?id=2e9ed05a8d545cf97f2ad1f8430d0f8619c2bbf4 commit 2e9ed05a8d545cf97f2ad1f8430d0f8619c2bbf4 Author: Thierry Thomas AuthorDate: 2023-12-15 15:18:47 +0000 Commit: Thierry Thomas CommitDate: 2023-12-15 15:18:47 +0000 science/code_saturne: upgrade to v8.1.0 Release notes at --- science/code_saturne/Makefile | 9 +- science/code_saturne/distinfo | 6 +- .../files/patch-build-aux_cs__compile__build.py | 14 + .../files/patch-build-aux_cs__link__library.py | 12 + .../code_saturne/files/patch-src_apps_Makefile.am | 11 + science/code_saturne/pkg-plist | 10957 +------------------ 6 files changed, 75 insertions(+), 10934 deletions(-) diff --git a/science/code_saturne/Makefile b/science/code_saturne/Makefile index f24a20f6efd2..e668813a8f50 100644 --- a/science/code_saturne/Makefile +++ b/science/code_saturne/Makefile @@ -1,6 +1,5 @@ PORTNAME= code_saturne -PORTVERSION= 8.0.2 -PORTREVISION= 2 +PORTVERSION= 8.1.0 CATEGORIES= science parallel MASTER_SITES= https://www.code-saturne.org/releases/ @@ -83,6 +82,8 @@ TERM?= vt100 # Default value needed for tput in jail or tinderbox # /libsaturne.so: # undefined reference to `__atomic_compare_exchange' CONFIGURE_ARGS+= --disable-openmp +.else +CONFIGURE_ARGS+= --enable-openmp .endif .if ${PORT_OPTIONS:MDOCS} @@ -96,12 +97,16 @@ BUILD_DEPENDS+= fig2dev:print/fig2dev \ BINARY_ALIAS+= sphinx-build=sphinx-build-${PYTHON_VER} ALL_TARGET= all pdf DOCS= AUTHORS ChangeLog README +PORTDOCS= * .endif pre-configure: ${REINPLACE_CMD} -e 's|/usr/bin/env python|${PYTHON_CMD}|' \ ${WRKSRC}/Makefile.am ${REINPLACE_CMD} -e 's|make -s|${GMAKE} -s|' ${WRKSRC}/m4/cs_petsc.m4 +.for cs in config/cs_auto_flags.sh libple/config/ple_auto_flags.sh + ${REINPLACE_CMD} -e 's|fopenmp=libomp|fopenmp|' ${WRKSRC}/${cs} +.endfor post-install: ${STRIP_CMD} ${STAGEDIR}${PREFIX}/libexec/code_saturne/cs_solver diff --git a/science/code_saturne/distinfo b/science/code_saturne/distinfo index 004587149561..eaba0ccab479 100644 --- a/science/code_saturne/distinfo +++ b/science/code_saturne/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1697142365 -SHA256 (code_saturne-8.0.2.tar.gz) = 48d33a55e9f7b77b486e0fa1706223910eb9add7d13f11bb18dc79583587378f -SIZE (code_saturne-8.0.2.tar.gz) = 61255604 +TIMESTAMP = 1702564424 +SHA256 (code_saturne-8.1.0.tar.gz) = 6f2b067337b8ad003a26b91f59971a1028f01cf14c962031629203899dc4053f +SIZE (code_saturne-8.1.0.tar.gz) = 64587304 diff --git a/science/code_saturne/files/patch-build-aux_cs__compile__build.py b/science/code_saturne/files/patch-build-aux_cs__compile__build.py new file mode 100644 index 000000000000..df2ad14be434 --- /dev/null +++ b/science/code_saturne/files/patch-build-aux_cs__compile__build.py @@ -0,0 +1,14 @@ +--- build-aux/cs_compile_build.py.orig 2023-12-14 20:49:47 UTC ++++ build-aux/cs_compile_build.py +@@ -394,8 +394,9 @@ def get_dynamic_lib_dep_flags(pkg, top_builddir=None, + if libs: + cmd_line += libs + " " + +- if rpath_list: +- cmd_line += "-Wl,-rpath -Wl," + ':'.join(rpath_list) ++ # Not needed on FreeBSD, we have ldconfig, and it causes the libs to get linked against $DESTDIR ++ #if rpath_list: ++ # cmd_line += "-Wl,-rpath -Wl," + ':'.join(rpath_list) + + return cmd_line.rstrip() + diff --git a/science/code_saturne/files/patch-build-aux_cs__link__library.py b/science/code_saturne/files/patch-build-aux_cs__link__library.py new file mode 100644 index 000000000000..fb1f88e3ff7f --- /dev/null +++ b/science/code_saturne/files/patch-build-aux_cs__link__library.py @@ -0,0 +1,12 @@ +--- build-aux/cs_link_library.py.orig 2023-12-14 20:36:11 UTC ++++ build-aux/cs_link_library.py +@@ -263,8 +263,7 @@ def build_shared_library(linker, + for o in other: + if o in ignore_deps: + continue +- if o[:2] == '-R': +- cmd += ["-Wl,-rpath", "-Wl,"+o[2:]] ++ # Not useful on FreeBSD (we have lsconfig) and causes libs to be linked against $DESTDIR + else: + cmd.append(o) + diff --git a/science/code_saturne/files/patch-src_apps_Makefile.am b/science/code_saturne/files/patch-src_apps_Makefile.am new file mode 100644 index 000000000000..3260e2ed6dbe --- /dev/null +++ b/science/code_saturne/files/patch-src_apps_Makefile.am @@ -0,0 +1,11 @@ +--- src/apps/Makefile.am.orig 2023-12-10 13:11:41 UTC ++++ src/apps/Makefile.am +@@ -221,7 +221,7 @@ install-exec-hook: ${local_libraries_add} + $(PYTHON) -B $(top_srcdir)/build-aux/cs_compile_build.py \ + --lib-flags-only --mode=install --dest "$(DESTDIR)"` ; \ + $(PYTHON) -B $(top_srcdir)/build-aux/cs_link_library.py -o "$(DESTDIR)$(libdir)/libsaturne.${SHARED_LIB_EXT}" --echo --linker ${CS_LD} --version ${cs_version_lib} --whole-archive-start ${libsaturne_a_libs} --whole-archive-end ${LDFLAGS_SHARED} ${CXXFLAGS_SHARED} ${LDFLAGS} ${AM_LDFLAGS} $${ldadd_saturne}; \ +- $(PYTHON) -B $(top_srcdir)/build-aux/cs_link_library.py -o "$(DESTDIR)$(libdir)/libcs_solver.${SHARED_LIB_EXT}" --echo --linker ${CS_LD} --version ${cs_version_lib} ${LDFLAGS_SHARED} ${CXXFLAGS_SHARED} cs_solver.$(OBJEXT) ${LDFLAGS} -L"$(DESTDIR)$(libdir)" -lsaturne-${cs_version_lib} ${AM_LDFLAGS} $${ldadd_saturne}; \ ++ $(PYTHON) -B $(top_srcdir)/build-aux/cs_link_library.py -o "$(DESTDIR)$(libdir)/libcs_solver.${SHARED_LIB_EXT}" --echo --linker ${CS_LD} --version ${cs_version_lib} ${LDFLAGS_SHARED} ${CXXFLAGS_SHARED} cs_solver.$(OBJEXT) ${LDFLAGS} -lsaturne-${cs_version_lib} ${AM_LDFLAGS} $${ldadd_saturne}; \ + }; \ + PYTHONPATH=$(top_srcdir)/python/code_saturne/base \ + CS_TOP_BUILDDIR=$(top_builddir) \ diff --git a/science/code_saturne/pkg-plist b/science/code_saturne/pkg-plist index 56de015b7474..0dbe94e40418 100644 --- a/science/code_saturne/pkg-plist +++ b/science/code_saturne/pkg-plist @@ -54,7 +54,13 @@ include/code_saturne/cs_block_dist.h include/code_saturne/cs_block_to_part.h include/code_saturne/cs_boundary.h include/code_saturne/cs_boundary_conditions.h +include/code_saturne/cs_boundary_conditions_check.h +include/code_saturne/cs_boundary_conditions_set_coeffs.h +include/code_saturne/cs_boundary_conditions_set_coeffs_symmetry.h +include/code_saturne/cs_boundary_conditions_set_coeffs_turb.h +include/code_saturne/cs_boundary_conditions_type.h include/code_saturne/cs_boundary_zone.h +include/code_saturne/cs_bw_time_diff.h include/code_saturne/cs_c_bindings.mod include/code_saturne/cs_calcium.h include/code_saturne/cs_cdo_advection.h @@ -96,8 +102,9 @@ include/code_saturne/cs_cf_bindings.mod include/code_saturne/cs_cf_model.h include/code_saturne/cs_cf_thermo.h include/code_saturne/cs_cfbl_headers.h +include/code_saturne/cs_coal.h +include/code_saturne/cs_coal_boundary_conditions.h include/code_saturne/cs_coal_incl.mod -include/code_saturne/cs_coal_radst.h include/code_saturne/cs_cogz_headers.h include/code_saturne/cs_comb_headers.h include/code_saturne/cs_combustion_gas.h @@ -109,7 +116,6 @@ include/code_saturne/cs_coupling.h include/code_saturne/cs_crystal_router.h include/code_saturne/cs_ctwr.h include/code_saturne/cs_ctwr_headers.h -include/code_saturne/cs_darc_headers.h include/code_saturne/cs_dbg.h include/code_saturne/cs_defs.h include/code_saturne/cs_divergence.h @@ -164,13 +170,16 @@ include/code_saturne/cs_gui_radiative_transfer.h include/code_saturne/cs_gui_specific_physics.h include/code_saturne/cs_gui_util.h include/code_saturne/cs_gwf.h +include/code_saturne/cs_gwf_headers.h +include/code_saturne/cs_gwf_hydraulic_model.h include/code_saturne/cs_gwf_param.h -include/code_saturne/cs_gwf_parameters.h -include/code_saturne/cs_gwf_physical_properties.h include/code_saturne/cs_gwf_priv.h include/code_saturne/cs_gwf_soil.h +include/code_saturne/cs_gwf_sspf.h include/code_saturne/cs_gwf_toolbox.h +include/code_saturne/cs_gwf_tpf.h include/code_saturne/cs_gwf_tracer.h +include/code_saturne/cs_gwf_uspf.h include/code_saturne/cs_halo.h include/code_saturne/cs_halo_perio.h include/code_saturne/cs_head_losses.h @@ -185,6 +194,7 @@ include/code_saturne/cs_hho_vecteq.h include/code_saturne/cs_hodge.h include/code_saturne/cs_ht_convert.h include/code_saturne/cs_ibm.h +include/code_saturne/cs_initialize_fields.h include/code_saturne/cs_interface.h include/code_saturne/cs_internal_coupling.h include/code_saturne/cs_interpolate.h @@ -269,6 +279,7 @@ include/code_saturne/cs_medcoupling_remapper.h include/code_saturne/cs_medcoupling_utils.h include/code_saturne/cs_meg_headers.h include/code_saturne/cs_meg_prototypes.h +include/code_saturne/cs_meg_xdef_wrapper.h include/code_saturne/cs_mesh.h include/code_saturne/cs_mesh_adjacencies.h include/code_saturne/cs_mesh_bad_cells.h @@ -353,6 +364,7 @@ include/code_saturne/cs_random.h include/code_saturne/cs_range_set.h include/code_saturne/cs_rank_neighbors.h include/code_saturne/cs_reco.h +include/code_saturne/cs_reco_cw.h include/code_saturne/cs_renumber.h include/code_saturne/cs_resource.h include/code_saturne/cs_restart.h @@ -377,7 +389,11 @@ include/code_saturne/cs_sles_pc.h include/code_saturne/cs_sles_pc_priv.h include/code_saturne/cs_sles_petsc.h include/code_saturne/cs_solid_selection.h +include/code_saturne/cs_solid_zone.h include/code_saturne/cs_solidification.h +include/code_saturne/cs_solve_equation.h +include/code_saturne/cs_solve_navier_stokes.h +include/code_saturne/cs_soot_model.h include/code_saturne/cs_sort.h include/code_saturne/cs_sort_partition.h include/code_saturne/cs_source_term.h @@ -386,7 +402,6 @@ include/code_saturne/cs_stl.h include/code_saturne/cs_syr_coupling.h include/code_saturne/cs_sys_coupling.h include/code_saturne/cs_system_info.h -include/code_saturne/cs_tagms.mod include/code_saturne/cs_thermal_model.h include/code_saturne/cs_thermal_system.h include/code_saturne/cs_time_control.h @@ -403,12 +418,13 @@ include/code_saturne/cs_turbulence_bc.h include/code_saturne/cs_turbulence_headers.h include/code_saturne/cs_turbulence_htles.h include/code_saturne/cs_turbulence_inflow.h +include/code_saturne/cs_turbulence_init.h include/code_saturne/cs_turbulence_ke.h include/code_saturne/cs_turbulence_kw.h include/code_saturne/cs_turbulence_ml.h include/code_saturne/cs_turbulence_model.h include/code_saturne/cs_turbulence_rij.h -include/code_saturne/cs_turbulence_rij_transport.h +include/code_saturne/cs_turbulence_rit.h include/code_saturne/cs_turbulence_rotation.h include/code_saturne/cs_turbulence_sa.h include/code_saturne/cs_turbulence_v2f.h @@ -431,7 +447,6 @@ include/code_saturne/cs_zone.h include/code_saturne/cstnum.mod include/code_saturne/cstphy.mod include/code_saturne/ctincl.mod -include/code_saturne/darcy_module.mod include/code_saturne/dimens.mod include/code_saturne/entsor.mod include/code_saturne/field.mod @@ -456,7 +471,6 @@ include/code_saturne/fvm_selector.h include/code_saturne/fvm_trace.h include/code_saturne/fvm_triangulate.h include/code_saturne/fvm_writer.h -include/code_saturne/ihmpre.mod include/code_saturne/lagran.mod include/code_saturne/mesh.mod include/code_saturne/numvar.mod @@ -470,10 +484,8 @@ include/code_saturne/ppcpfu.mod include/code_saturne/ppincl.mod include/code_saturne/ppppar.mod include/code_saturne/ppthch.mod -include/code_saturne/ptrglo.mod include/code_saturne/radiat.mod include/code_saturne/rotation.mod -include/code_saturne/spefun.mod include/code_saturne/sshaerosol.mod include/code_saturne/turbomachinery.mod include/code_saturne/vof.mod @@ -482,12 +494,12 @@ include/ple_coupling.h include/ple_defs.h include/ple_locator.h lib/code_saturne_build.cfg -lib/libcs_solver-8.0.so +lib/libcs_solver-8.1.so lib/libcs_solver.so lib/libple.so lib/libple.so.2 lib/libple.so.2.0.4 -lib/libsaturne-8.0.so +lib/libsaturne-8.1.so lib/libsaturne.so %%PYTHON_SITELIBDIR%%/code_saturne/__init__.py %%PYTHON_SITELIBDIR%%/code_saturne/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc @@ -1705,7 +1717,6 @@ man/man1/ple-config.1.gz %%DATADIR%%/data/user/dp_C3P_auto_EHC %%DATADIR%%/data/user/dp_C4P %%DATADIR%%/data/user/dp_ELE -%%DATADIR%%/data/user/dp_FUE %%DATADIR%%/data/user/dp_transformers %%DATADIR%%/data/user/meteo %%DATADIR%%/images/logo_salome_cfd.png @@ -1724,15 +1735,13 @@ man/man1/ple-config.1.gz %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-cooling_towers.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-electric_arcs.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-electric_arcs_ieljou_3_or_4.c -%%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-fuel.f90 %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-gas_3ptchem.f90 %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-gas_ebu.f90 %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-gas_libby_williams.f90 %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-mapped_inlet.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-medcoupling_remapper_2d.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-notebook.c -%%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-pulverized_coal.f90 -%%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-richards.c +%%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-pulverized_coal.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions-time_table.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_boundary_conditions_ale-base.c @@ -1743,10 +1752,10 @@ man/man1/ple-config.1.gz %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-boundary_forces.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-force_temperature.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-mean_profiles.c +%%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-medcoupling_slice.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-nusselt_and_friction_calculation.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-nusselt_calculation.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-parallel_operations.c -%%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-richards_flux.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-scalar_balance.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-stopping_criterion.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_extra_operations-turbomachinery.c @@ -1763,13 +1772,11 @@ man/man1/ple-config.1.gz %%DATADIR%%/user_sources/EXAMPLES/cs_user_initialization-compressible.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_initialization-cooling_towers.c %%DATADIR%%/user_sources/EXAMPLES/cs_user_initialization-electric_arcs.c 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