From nobody Fri Dec 15 12:56:00 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Ss8NK2B0hz52mC3; Fri, 15 Dec 2023 12:56:01 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Ss8NK0BkKz3g76; Fri, 15 Dec 2023 12:56:01 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1702644961; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=xBUE1/iK4eOF1C1+foA2k/uSA44lg/FsmDz20uXxNls=; b=T/7RBb7xsCIrvK9izJ94IrAyG90IoV4VL+urd0M0zYjyDzdDEjID5YlYOfcZUnW+KaT6op n8USrrBRdZsia5zbNVdgNWE5Vt2Naz0BMJe7xHSPxwWyZe+F/JkVp1wFPajJkynpMYj5FU Uxx9nY0MXZZMLsGd5WEpXWmkx1zrFdfjBe8/fxhO5eiLINixpMcLXXX5uzG9TYuEigixTd gzfDGS9CtsIk25uW8L17lDmPwETOrPHOwQfjIfEi4ARqyvFROBQmAr4TRPleRLQAIoDzWe qUrMolSZI51tGpkF6iMshQD1uK81ahgs2c+TNwTn9GkBIUaMsypY6foTIsZuJA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1702644961; a=rsa-sha256; cv=none; b=iqpMeGDOaaozmjsiIKVcnfB3dK9AWNi/Hyd8kRKNThacCTAHIkpW82mqobgB4ots58W88z ctXX9eXtLiG0rXrRCUQC8f7AkBSa8yONqIqehGPMPVtJGFsKK9Q2ysvfteEswvTUVnsmYC z8OIj2oBxh893/dc1RH/vcuD8Tayg3k1fNdvlXVWuvQ7cKn3jl7RvGvMeqOoNvLULBR5D4 Z+xxvTXEd9+OcK3xXcWVtVLbDH4nczhXtOaT6/I36UlowAPk9ZrUroO0D6yrqVYjCbXz27 C/taiJym7xVMiXPx75rtr+/MOCZTFUMVqcB+pAD/JOuConwG3aSr8NG5YeH7QA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1702644961; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=xBUE1/iK4eOF1C1+foA2k/uSA44lg/FsmDz20uXxNls=; b=PZ+LFiwxgYLKELXjXwO6CfyV/4gqqnzMo0AMV+eDisLQ4s1+VP/1P61ISiV4nE3B+R9Idy UKidiIiW+iaFkRymam2+4MuvaVLROp7zGTN5RKUixW2Mu06eLJ3SlcViYvOtpsKheHZ54C lmZlIQc+pH7+BH5p1yclRviC7Lxz6uONkQFT4djjbJJhkA6zNHOb4/xVi1v80klwx7vpeu Mme9X8YnCUgeiCz0an6C8ojG8flhGZrntrgmgnQrtYq8hR98A84IzZd/PVBngV3zNTXHQ0 dAZx0d92dp0sF05frIzVdhwE1Atu/LJZgTqBUvY8Iu9EMIzWKT6Zu52amnN3gQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Ss8NJ6Q5Qz1BCL; Fri, 15 Dec 2023 12:56:00 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 3BFCu0xK014085; Fri, 15 Dec 2023 12:56:00 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 3BFCu0Z1014082; Fri, 15 Dec 2023 12:56:00 GMT (envelope-from git) Date: Fri, 15 Dec 2023 12:56:00 GMT Message-Id: <202312151256.3BFCu0Z1014082@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Muhammad Moinur Rahman Subject: git: 82e85eb5bf49 - main - biology/R-cran-Biobase: New port List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: bofh X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 82e85eb5bf499342674cc1fb30366cf0134d21aa Auto-Submitted: auto-generated The branch main has been updated by bofh: URL: https://cgit.FreeBSD.org/ports/commit/?id=82e85eb5bf499342674cc1fb30366cf0134d21aa commit 82e85eb5bf499342674cc1fb30366cf0134d21aa Author: Muhammad Moinur Rahman AuthorDate: 2023-12-15 11:17:08 +0000 Commit: Muhammad Moinur Rahman CommitDate: 2023-12-15 12:55:44 +0000 biology/R-cran-Biobase: New port Functions that are needed by many other packages or which replace R functions. WWW: https://bioconductor.org/packages/Biobase --- biology/Makefile | 1 + biology/R-cran-Biobase/Makefile | 19 +++++++++++++++++++ biology/R-cran-Biobase/distinfo | 3 +++ biology/R-cran-Biobase/pkg-descr | 1 + 4 files changed, 24 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index a1e02321c2a5..6f35c5481dc7 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -1,5 +1,6 @@ COMMENT = Biology + SUBDIR += R-cran-Biobase SUBDIR += R-cran-BiocGenerics SUBDIR += R-cran-BiocManager SUBDIR += abyss diff --git a/biology/R-cran-Biobase/Makefile b/biology/R-cran-Biobase/Makefile new file mode 100644 index 000000000000..42f96c77d7ce --- /dev/null +++ b/biology/R-cran-Biobase/Makefile @@ -0,0 +1,19 @@ +PORTNAME= Biobase +PORTVERSION= 2.62.0 +CATEGORIES= biology +MASTER_SITES= https://www.bioconductor.org/packages/release/bioc/src/contrib/ +DISTNAME= ${PORTNAME}_${PORTVERSION} + +MAINTAINER= bofh@FreeBSD.org +COMMENT= Base functions for Bioconductor +WWW= https://bioconductor.org/packages/Biobase + +LICENSE= ART20 + +CRAN_DEPENDS= R-cran-BiocGenerics>=0.27.1:biology/R-cran-BiocGenerics +BUILD_DEPENDS= ${CRAN_DEPENDS} +RUN_DEPENDS= ${CRAN_DEPENDS} + +USES= cran:auto-plist,compiles + +.include diff --git a/biology/R-cran-Biobase/distinfo b/biology/R-cran-Biobase/distinfo new file mode 100644 index 000000000000..df3efd358691 --- /dev/null +++ b/biology/R-cran-Biobase/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1702637713 +SHA256 (Biobase_2.62.0.tar.gz) = ef753acc499c2504e226bf76e0acc08b7aa370fc60cc369bb8ebc1913f57d37e +SIZE (Biobase_2.62.0.tar.gz) = 1795862 diff --git a/biology/R-cran-Biobase/pkg-descr b/biology/R-cran-Biobase/pkg-descr new file mode 100644 index 000000000000..9f55753715b5 --- /dev/null +++ b/biology/R-cran-Biobase/pkg-descr @@ -0,0 +1 @@ +Functions that are needed by many other packages or which replace R functions.