From nobody Fri Dec 15 12:55:57 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Ss8NF5CK0z52mWn; Fri, 15 Dec 2023 12:55:57 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Ss8NF4cQdz3fcD; Fri, 15 Dec 2023 12:55:57 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1702644957; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=/MUbKGWg3UBtPMjGkMGnfRZYHDpstwchhd3SvAACxsY=; b=BjaiG3Evd6w90dC9kCyiyc9nUVrAvC3gwwuZg8WH62Aye6s57pAb/DkfX9gZRnWz/JepK+ 5yC2//v/Kh8J4PJUP1j6DuHP4pU9k0wP52x5tYcEpPIGMPAuRsBrCsUHYGtCmMZLQVEPHX S6Hi3Cj/Iht05WeJY96VGH+nFVDeGIAwY6kZh1WtHdsiH2/BSefXG7I8Z+BuvwWrF2N8zu yb3qnVooEUlqyrtot1hAEYv7SLLI+HqqPPiFLv/bSueZgnYl3eyRhPj/bpRxnRlFh+UcoA KNx0Br7fQbhlHosVLZIFF5Rf51n4+ERPHO8W8Pu8fWMC5Tr7zVTPGEqg05zBOQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1702644957; a=rsa-sha256; cv=none; b=oBxAT3k+XthUnaALYaDfM2kbCbcJRVrhNB/zvYsY5/O+EKdGwGceATIMF13PV5owMdodYG uV16YHE8KKX2VVbKO/UgHWyRmKBtyGA95MXkaxL/JpXGRfv3qDcIXcWGzNF7+KqH+ARLn+ HY9VdKzCADioGYqA6zHzUSVI6XKmjPEpih48mKyTOvR828dhSNFwjGFWwofSRlWNWHjWoo I0DwAMhfp/7rWdp/RS/KmCC4ibKgefIKflLBD16m8p47a2rPgMFP/2R2Yqa2su3Yi9mJ2w 6JjnW1CfZRFHs9dwcdGDjBhwest6sOLQXxzuVzR+dV+wkj3QJYFvKGtMEWEpOA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1702644957; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=/MUbKGWg3UBtPMjGkMGnfRZYHDpstwchhd3SvAACxsY=; b=dNwpriUwqBGw+j63L7zR4INXhxXUgp0hNpOIbNYKnXq5ppjx+IwfK2m4ypBX4frbeviUEU OXI1j6M4KbD4jsmKersdOPrsh45dIbDCqryA8wXlu+sOuF04J1UUVOB8bA+gI3dfei6eKr 0nveZgTbph12Z18xkxlE5eiAlvokDMCFOxp5RAjMyTFSC6MS3PdY0KjHhnbiMTUu5CroD1 FRi5jil3M0CrZBec1e/rn2Xuhly+h0GMvsSK21FRqOYiAXe9RtrNMNa7fAzotpFILjmXwg 2eXQiaMzG/X0Pom0BpEasngxf9EZ8CaHcDCBXPax0M2xximOROOpa2F9+ehebA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Ss8NF3fy1z19dp; Fri, 15 Dec 2023 12:55:57 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 3BFCtv1G013956; Fri, 15 Dec 2023 12:55:57 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 3BFCtvO2013953; Fri, 15 Dec 2023 12:55:57 GMT (envelope-from git) Date: Fri, 15 Dec 2023 12:55:57 GMT Message-Id: <202312151255.3BFCtvO2013953@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Muhammad Moinur Rahman Subject: git: 5051eb68b916 - main - biology/R-cran-BiocManager: New port List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: bofh X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 5051eb68b9167a5e565a8e24aaa7989f0ea51196 Auto-Submitted: auto-generated The branch main has been updated by bofh: URL: https://cgit.FreeBSD.org/ports/commit/?id=5051eb68b9167a5e565a8e24aaa7989f0ea51196 commit 5051eb68b9167a5e565a8e24aaa7989f0ea51196 Author: Muhammad Moinur Rahman AuthorDate: 2023-12-15 10:30:16 +0000 Commit: Muhammad Moinur Rahman CommitDate: 2023-12-15 12:55:43 +0000 biology/R-cran-BiocManager: New port The BiocManager package, as the modern successor package to BiocInstaller, allows users to install and manage packages from the Bioconductor project. Bioconductor focuses on the statistical analysis and comprehension of high-throughput genomic data. WWW: https://bioconductor.github.io/BiocManager/ --- biology/Makefile | 1 + biology/R-cran-BiocManager/Makefile | 14 ++++++++++++++ biology/R-cran-BiocManager/distinfo | 3 +++ biology/R-cran-BiocManager/pkg-descr | 4 ++++ 4 files changed, 22 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index dc020b1fd61e..cbf07586368b 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -1,5 +1,6 @@ COMMENT = Biology + SUBDIR += R-cran-BiocManager SUBDIR += abyss SUBDIR += ad2vcf SUBDIR += artemis diff --git a/biology/R-cran-BiocManager/Makefile b/biology/R-cran-BiocManager/Makefile new file mode 100644 index 000000000000..2ecab572d8e4 --- /dev/null +++ b/biology/R-cran-BiocManager/Makefile @@ -0,0 +1,14 @@ +PORTNAME= BiocManager +PORTVERSION= 1.30.22 +CATEGORIES= biology +DISTNAME= ${PORTNAME}_${PORTVERSION} + +MAINTAINER= bofh@FreeBSD.org +COMMENT= Convenient tool to install and update Bioconductor packages +WWW= https://cran.r-project.org/web/packages/BiocManager/ + +LICENSE= ART20 + +USES= cran:auto-plist,compiles + +.include diff --git a/biology/R-cran-BiocManager/distinfo b/biology/R-cran-BiocManager/distinfo new file mode 100644 index 000000000000..e007f57ce45d --- /dev/null +++ b/biology/R-cran-BiocManager/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1702634634 +SHA256 (BiocManager_1.30.22.tar.gz) = 5389c9c0d6562b0757659fb8262ab51b48225c4ba7e9acd4f5e7c0049735e835 +SIZE (BiocManager_1.30.22.tar.gz) = 582690 diff --git a/biology/R-cran-BiocManager/pkg-descr b/biology/R-cran-BiocManager/pkg-descr new file mode 100644 index 000000000000..bd8a1376348c --- /dev/null +++ b/biology/R-cran-BiocManager/pkg-descr @@ -0,0 +1,4 @@ +The BiocManager package, as the modern successor package to BiocInstaller, +allows users to install and manage packages from the Bioconductor project. +Bioconductor focuses on the statistical analysis and comprehension of +high-throughput genomic data.