From nobody Fri Aug 11 08:11:28 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4RMc290HThz4mSF8; Fri, 11 Aug 2023 08:11:29 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4RMc283BY0z3Mgr; Fri, 11 Aug 2023 08:11:28 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1691741488; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=jXOS62gxzwM5jH3Ov9bkmrjLLmjCCSGfllADcfbsGgs=; b=akT3aj5PAuUgDnklqVJ5hRGUitvUnGu9BHIwU+JufrL6gCWnjRs7ErexasVLEAsUtqLv88 MrqAWj3IH/BLPvpnA7darBKVwL8ZgZ87mYUJrD384Ry/6YiQ/aY5NhISRDbmSw+Rq9czyE +HeRNLFjv7WWnUveR78e9Xf7d8d7Z/4tiRoct0dT5y31eSmVDA997hebzkWn6YA98FId9F +bon0QP5ypqYYvElZ9cwuNmCHE71AoewAkibzXZrJwjA0GHf+eRN5FG+Y8U4w4+BKEjGa4 akmyPUnARl/DBO8t0EdH9JBgBlnkkyXyXSwj8a5jHzWGU/7q8OhUME03fbULYg== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1691741488; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=jXOS62gxzwM5jH3Ov9bkmrjLLmjCCSGfllADcfbsGgs=; b=b1EEXFjYypqo3cJVpgrCdT3fZvGxrxrw3oaAvbo6HaYhrvzSIY3u9/8d86xK4suqtxtx2M HQa7/5t7e55IOt57ddaDM78cviaPPOF/FHtxLI8zjlawwm3L6zt2zwmY4FRA1q4AgthoTO RFcMb1cWJsCRUcBhtxUqqec4kFWClYxd9T31PfQNePe3wNhDeyC46mZBFYMIC6vJNczD/4 s5Q5Wvud/3yN1HBRsdTh86p6FS/PtSnQwpvCFZdatqv75/QCsPOfv3gJmjtQqSf2hjM3Xp Rs8nS2X+98EHbHT7+SwTZj2/TqrsqQ+k/F0/7G3ZNdba7rt9lZwbSkB/exNgDA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1691741488; a=rsa-sha256; cv=none; b=ls7FBbQ7jKE5cuIw2SeUOLZnmaqOevMmUBAFgeKU+SZ4Ii5g30wwzEetFhzGAUgOWXe5zX LOjbdoKlASVGvKj60iTayPkqSscjxTNF5Ex+N9Zm7tz1vJzu4+SgIOFFUlEsCv1WIrCIDD FR92iDA3II0X0h3FnAxdQWC3+H2lnfoWQa1t+NSPLqm1+qlcX/DfRDZU1h339vA5xBhdWI ob1jg0RFWTBQYq00vDIMwfkWc4QGqR4E8lYF6NImXzV08Jf8daRTEqhGTS5QGE+ubk32tH lLsEu10EbpfbKlySNd6C9xIGet9fktMsC+wXf4XNrbN77RR04otvdHWIG6ml2A== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4RMc2821DHzXZb; Fri, 11 Aug 2023 08:11:28 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 37B8BSP9003731; Fri, 11 Aug 2023 08:11:28 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 37B8BS00003728; Fri, 11 Aug 2023 08:11:28 GMT (envelope-from git) Date: Fri, 11 Aug 2023 08:11:28 GMT Message-Id: <202308110811.37B8BS00003728@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 0845e33fe1bb - main - science/{,py-}arbor: Update 0.8.1 =?utf-8?Q?=E2=86=92?= 0.9.0 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 0845e33fe1bb8e2fffaa278684e6b084ac021e52 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=0845e33fe1bb8e2fffaa278684e6b084ac021e52 commit 0845e33fe1bb8e2fffaa278684e6b084ac021e52 Author: Yuri Victorovich AuthorDate: 2023-08-11 08:10:29 +0000 Commit: Yuri Victorovich CommitDate: 2023-08-11 08:11:18 +0000 science/{,py-}arbor: Update 0.8.1 → 0.9.0 Reported by: portscout --- science/arbor/Makefile | 6 ++++-- science/arbor/distinfo | 6 +++--- science/arbor/pkg-plist | 6 ++++++ science/py-arbor/Makefile | 5 +++-- science/py-arbor/distinfo | 6 +++--- science/py-arbor/files/patch-CMakeLists.txt | 10 ++++++++-- 6 files changed, 27 insertions(+), 12 deletions(-) diff --git a/science/arbor/Makefile b/science/arbor/Makefile index d4bb0259284a..cb774c521698 100644 --- a/science/arbor/Makefile +++ b/science/arbor/Makefile @@ -1,6 +1,6 @@ PORTNAME= arbor DISTVERSIONPREFIX= v -DISTVERSION= 0.8.1 +DISTVERSION= 0.9.0 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -17,7 +17,9 @@ BUILD_DEPENDS= bash:shells/bash \ nlohmann-json>0:devel/nlohmann-json \ random123>0:devel/random123 \ ${PYTHON_PKGNAMEPREFIX}svgwrite>0:graphics/py-svgwrite@${PY_FLAVOR} -LIB_DEPENDS= libpugixml.so:textproc/pugixml +BUILD_DEPENDS+= ${LOCALBASE}/lib/cmake/GTest/GTestConfig.cmake:devel/googletest # https://github.com/arbor-sim/arbor/issues/2205 +LIB_DEPENDS= libhwloc.so:devel/hwloc2 \ + libpugixml.so:textproc/pugixml RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}svgwrite>0:graphics/py-svgwrite@${PY_FLAVOR} TEST_DEPENDS= googletest>=0:devel/googletest diff --git a/science/arbor/distinfo b/science/arbor/distinfo index 2fd4d9cc91b9..467206167c80 100644 --- a/science/arbor/distinfo +++ b/science/arbor/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1671842310 -SHA256 (arbor-sim-arbor-v0.8.1_GH0.tar.gz) = 9d32edf5def9bbe30b5648d064291b86cf3f637b2dc0b82f7a276f5f41e6bcef -SIZE (arbor-sim-arbor-v0.8.1_GH0.tar.gz) = 7812575 +TIMESTAMP = 1691736150 +SHA256 (arbor-sim-arbor-v0.9.0_GH0.tar.gz) = 920c7926453379d367c6c8bb01ff867c03e44e8a7a6a5655d5eaa3d692618ca1 +SIZE (arbor-sim-arbor-v0.9.0_GH0.tar.gz) = 10164524 diff --git a/science/arbor/pkg-plist b/science/arbor/pkg-plist index 88f635490f8f..4afab017bce6 100644 --- a/science/arbor/pkg-plist +++ b/science/arbor/pkg-plist @@ -12,6 +12,7 @@ include/arbor/cable_cell.hpp include/arbor/cable_cell_param.hpp include/arbor/common_types.hpp include/arbor/communication/mpi_error.hpp +include/arbor/communication/remote.hpp include/arbor/constants.hpp include/arbor/context.hpp include/arbor/cv_policy.hpp @@ -58,6 +59,7 @@ include/arbor/recipe.hpp include/arbor/s_expr.hpp include/arbor/sampling.hpp include/arbor/schedule.hpp +include/arbor/serdes.hpp include/arbor/simd/approx.hpp include/arbor/simd/avx.hpp include/arbor/simd/avx512.hpp @@ -68,6 +70,9 @@ include/arbor/simd/neon.hpp include/arbor/simd/simd.hpp include/arbor/simd/simd_io.hpp include/arbor/simd/sve.hpp +include/arbor/simd/sve_bits.hpp +include/arbor/simd/vls_sve.hpp +include/arbor/simd/vls_sve_bits.hpp include/arbor/simple_sampler.hpp include/arbor/simulation.hpp include/arbor/spike.hpp @@ -99,6 +104,7 @@ include/arborenv/with_mpi.hpp include/arborio/cableio.hpp include/arborio/cv_policy_parse.hpp include/arborio/export.hpp +include/arborio/json_serdes.hpp include/arborio/label_parse.hpp include/arborio/neurolucida.hpp include/arborio/neuroml.hpp diff --git a/science/py-arbor/Makefile b/science/py-arbor/Makefile index 8bd2028e8784..b6e559395a89 100644 --- a/science/py-arbor/Makefile +++ b/science/py-arbor/Makefile @@ -1,6 +1,6 @@ PORTNAME= arbor DISTVERSIONPREFIX= v -DISTVERSION= 0.8.1 +DISTVERSION= 0.9.0 CATEGORIES= science PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -11,7 +11,8 @@ WWW= https://arbor-sim.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/../LICENSE -BUILD_DEPENDS= pybind11>0:devel/pybind11 +BUILD_DEPENDS= pybind11>0:devel/pybind11 \ + nlohmann-json>0:devel/nlohmann-json LIB_DEPENDS= libarbor.so:science/arbor USES= cmake compiler:c++17-lang localbase:ldflags python diff --git a/science/py-arbor/distinfo b/science/py-arbor/distinfo index 4c6eb0df5332..249aad786e70 100644 --- a/science/py-arbor/distinfo +++ b/science/py-arbor/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1671874647 -SHA256 (arbor-sim-arbor-v0.8.1_GH0.tar.gz) = 9d32edf5def9bbe30b5648d064291b86cf3f637b2dc0b82f7a276f5f41e6bcef -SIZE (arbor-sim-arbor-v0.8.1_GH0.tar.gz) = 7812575 +TIMESTAMP = 1691740349 +SHA256 (arbor-sim-arbor-v0.9.0_GH0.tar.gz) = 920c7926453379d367c6c8bb01ff867c03e44e8a7a6a5655d5eaa3d692618ca1 +SIZE (arbor-sim-arbor-v0.9.0_GH0.tar.gz) = 10164524 diff --git a/science/py-arbor/files/patch-CMakeLists.txt b/science/py-arbor/files/patch-CMakeLists.txt index 9441da10091c..988f55467741 100644 --- a/science/py-arbor/files/patch-CMakeLists.txt +++ b/science/py-arbor/files/patch-CMakeLists.txt @@ -1,4 +1,4 @@ ---- CMakeLists.txt.orig 2022-11-15 15:19:19 UTC +--- CMakeLists.txt.orig 2023-08-10 09:47:38 UTC +++ CMakeLists.txt @@ -1,3 +1,7 @@ +cmake_minimum_required(VERSION 3.19) @@ -8,7 +8,7 @@ include(GNUInstallDirs) set(PYBIND11_CPP_STANDARD -std=c++17) -@@ -79,14 +83,14 @@ if (ARB_WITH_MPI) +@@ -80,14 +84,14 @@ if (ARB_WITH_MPI) endif() # For unit tests on C++ side of Python wrappers @@ -26,3 +26,9 @@ # Set the installation path +@@ -117,4 +121,4 @@ endif() + + install(TARGETS pyarb DESTINATION ${_python_module_install_path}) + install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/__init__.py DESTINATION ${_python_module_install_path}) +-install(FILES ${PROJECT_SOURCE_DIR}/VERSION ${PROJECT_SOURCE_DIR}/README.md ${PROJECT_SOURCE_DIR}/LICENSE DESTINATION ${_python_module_install_path}) ++install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/../VERSION DESTINATION ${_python_module_install_path})