git: 57d280a35eb7 - main - biology/minimap2: Update to 2.25

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From: Jason W. Bacon <jwb_at_FreeBSD.org>
Date: Sat, 29 Apr 2023 14:53:41 UTC
The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=57d280a35eb7d931d7009182b8dd2289c946f391

commit 57d280a35eb7d931d7009182b8dd2289c946f391
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2023-04-29 14:51:07 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2023-04-29 14:53:40 +0000

    biology/minimap2: Update to 2.25
    
    New feature to output sequences in secondary alignments
    Several minor enhancements and fixes
    Changes: https://github.com/lh3/minimap2/releases
    
    Reported by:    portscout
---
 biology/minimap2/Makefile  | 2 +-
 biology/minimap2/distinfo  | 6 +++---
 biology/minimap2/pkg-descr | 6 ------
 3 files changed, 4 insertions(+), 10 deletions(-)

diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile
index 83084fd86a16..ff6799f92d2a 100644
--- a/biology/minimap2/Makefile
+++ b/biology/minimap2/Makefile
@@ -1,6 +1,6 @@
 PORTNAME=		minimap2
 DISTVERSIONPREFIX=	v
-DISTVERSION=		2.24
+DISTVERSION=		2.25
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/minimap2/distinfo b/biology/minimap2/distinfo
index 65cf355b10a5..7c79ce9501e2 100644
--- a/biology/minimap2/distinfo
+++ b/biology/minimap2/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1640960772
-SHA256 (lh3-minimap2-v2.24_GH0.tar.gz) = 2e3264300661cf1fce6adabffe6970ec59d46f3e8150dd40fa4501ff4f6c0dbc
-SIZE (lh3-minimap2-v2.24_GH0.tar.gz) = 253050
+TIMESTAMP = 1682729894
+SHA256 (lh3-minimap2-v2.25_GH0.tar.gz) = 9742ff0be01e51ea7d65f70c01d1344eee6f0d7b135359e0c00aec30fb74ac38
+SIZE (lh3-minimap2-v2.25_GH0.tar.gz) = 257574
diff --git a/biology/minimap2/pkg-descr b/biology/minimap2/pkg-descr
index e4e8dbd749d9..d0a8f4d1b41d 100644
--- a/biology/minimap2/pkg-descr
+++ b/biology/minimap2/pkg-descr
@@ -1,16 +1,10 @@
 Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA
 sequences against a large reference database. Typical use cases include:
-
 (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome
-
 (2) finding overlaps between long reads with error rate up to ~15%
-
 (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA
     readsagainst a reference genome
-
 (4) aligning Illumina single- or paired-end reads
-
 (5) assembly-to-assembly alignment
-
 (6) full-genome alignment between two closely related species with divergence
     below ~15%