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Sun, 27 Nov 2022 10:12:24 GMT (envelope-from git) Date: Sun, 27 Nov 2022 10:12:24 GMT Message-Id: <202211271012.2ARACOi9026971@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 2647f3e012a0 - main - science/arbor: New port: Multi-compartment neural network simulation library List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2647f3e012a03a3146eef7bab28639690022c285 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=2647f3e012a03a3146eef7bab28639690022c285 commit 2647f3e012a03a3146eef7bab28639690022c285 Author: Yuri Victorovich AuthorDate: 2022-11-27 10:08:23 +0000 Commit: Yuri Victorovich CommitDate: 2022-11-27 10:12:20 +0000 science/arbor: New port: Multi-compartment neural network simulation library --- science/Makefile | 1 + science/arbor/Makefile | 33 ++++++++++++++ science/arbor/distinfo | 3 ++ science/arbor/pkg-descr | 3 ++ science/arbor/pkg-plist | 114 ++++++++++++++++++++++++++++++++++++++++++++++++ 5 files changed, 154 insertions(+) diff --git a/science/Makefile b/science/Makefile index 9599ad5c079a..c67e3684888c 100644 --- a/science/Makefile +++ b/science/Makefile @@ -28,6 +28,7 @@ SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += apbs + SUBDIR += arbor SUBDIR += ascent SUBDIR += atompaw SUBDIR += avogadro2 diff --git a/science/arbor/Makefile b/science/arbor/Makefile new file mode 100644 index 000000000000..63a3a6bbd3fc --- /dev/null +++ b/science/arbor/Makefile @@ -0,0 +1,33 @@ +PORTNAME= arbor +DISTVERSIONPREFIX= v +DISTVERSION= 0.8 +CATEGORIES= science + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Multi-compartment neural network simulation library +WWW= https://arbor-sim.org/ + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= bash:shells/bash \ + libfmt>0:devel/libfmt \ + nlohmann-json>0:devel/nlohmann-json \ + random123>0:devel/random123 \ + ${PYTHON_PKGNAMEPREFIX}svgwrite>0:graphics/py-svgwrite@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}svgwrite>0:graphics/py-svgwrite@${PY_FLAVOR} + +USES= cmake compiler:c++17-lang python shebangfix + +USE_GITHUB= yes +GH_ACCOUNT= arbor-sim + +SHEBANG_FILES= scripts/arbor-build-catalogue + +CMAKE_ON= BUILD_SHARED_LIBS +CMAKE_ARGS= -DPython3_EXECUTABLE=${PYTHON_CMD} + +post-install: + @${RMDIR} ${STAGEDIR}${DOCSDIR} + +.include diff --git a/science/arbor/distinfo b/science/arbor/distinfo new file mode 100644 index 000000000000..6a64e8f1e731 --- /dev/null +++ b/science/arbor/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1669535366 +SHA256 (arbor-sim-arbor-v0.8_GH0.tar.gz) = ee6b2486b1142cf4412dddd1caece0926d1712b8d1868283e3bfe73e4ec2cb71 +SIZE (arbor-sim-arbor-v0.8_GH0.tar.gz) = 7794543 diff --git a/science/arbor/pkg-descr b/science/arbor/pkg-descr new file mode 100644 index 000000000000..6350b89f2e28 --- /dev/null +++ b/science/arbor/pkg-descr @@ -0,0 +1,3 @@ +Arbor is a multi-compartment neuron simulation library; compatible with +next-generation accelerators; best-practices applied to research software; +focussed on community-driven development. diff --git a/science/arbor/pkg-plist b/science/arbor/pkg-plist new file mode 100644 index 000000000000..c450df72c2c7 --- /dev/null +++ b/science/arbor/pkg-plist @@ -0,0 +1,114 @@ +bin/arbor-build-catalogue +bin/lmorpho +bin/modcc +include/arbor/arb_types.h +include/arbor/arb_types.hpp +include/arbor/arb_types.inc +include/arbor/arbexcept.hpp +include/arbor/assert.hpp +include/arbor/assert_macro.hpp +include/arbor/benchmark_cell.hpp +include/arbor/cable_cell.hpp +include/arbor/cable_cell_param.hpp +include/arbor/common_types.hpp +include/arbor/communication/mpi_error.hpp +include/arbor/constants.hpp +include/arbor/context.hpp +include/arbor/cv_policy.hpp +include/arbor/domain_decomposition.hpp +include/arbor/domdecexcept.hpp +include/arbor/event_generator.hpp +include/arbor/export.hpp +include/arbor/fvm_types.hpp +include/arbor/generic_event.hpp +include/arbor/gpu/cuda_api.hpp +include/arbor/gpu/gpu_api.hpp +include/arbor/gpu/gpu_common.hpp +include/arbor/gpu/hip_api.hpp +include/arbor/gpu/math_cu.hpp +include/arbor/gpu/reduce_by_key.hpp +include/arbor/iexpr.hpp +include/arbor/lif_cell.hpp +include/arbor/load_balance.hpp +include/arbor/math.hpp +include/arbor/mechanism.hpp +include/arbor/mechanism_abi.h +include/arbor/mechcat.hpp +include/arbor/mechinfo.hpp +include/arbor/morph/cv_data.hpp +include/arbor/morph/embed_pwlin.hpp +include/arbor/morph/isometry.hpp +include/arbor/morph/label_dict.hpp +include/arbor/morph/locset.hpp +include/arbor/morph/mcable_map.hpp +include/arbor/morph/morphexcept.hpp +include/arbor/morph/morphology.hpp +include/arbor/morph/mprovider.hpp +include/arbor/morph/place_pwlin.hpp +include/arbor/morph/primitives.hpp +include/arbor/morph/region.hpp +include/arbor/morph/segment_tree.hpp +include/arbor/morph/stitch.hpp +include/arbor/profile/clock.hpp +include/arbor/profile/meter.hpp +include/arbor/profile/meter_manager.hpp +include/arbor/profile/profiler.hpp +include/arbor/profile/timer.hpp +include/arbor/recipe.hpp +include/arbor/s_expr.hpp +include/arbor/sampling.hpp +include/arbor/schedule.hpp +include/arbor/simd/approx.hpp +include/arbor/simd/avx.hpp +include/arbor/simd/avx512.hpp +include/arbor/simd/generic.hpp +include/arbor/simd/implbase.hpp +include/arbor/simd/native.hpp +include/arbor/simd/neon.hpp +include/arbor/simd/simd.hpp +include/arbor/simd/simd_io.hpp +include/arbor/simd/sve.hpp +include/arbor/simple_sampler.hpp +include/arbor/simulation.hpp +include/arbor/spike.hpp +include/arbor/spike_event.hpp +include/arbor/spike_source_cell.hpp +include/arbor/symmetric_recipe.hpp +include/arbor/util/any_cast.hpp +include/arbor/util/any_ptr.hpp +include/arbor/util/any_visitor.hpp +include/arbor/util/compat.hpp +include/arbor/util/expected.hpp +include/arbor/util/extra_traits.hpp +include/arbor/util/handle_set.hpp +include/arbor/util/hash_def.hpp +include/arbor/util/lexcmp_def.hpp +include/arbor/util/pp_util.hpp +include/arbor/util/scope_exit.hpp +include/arbor/util/typed_map.hpp +include/arbor/util/uninitialized.hpp +include/arbor/util/unique_any.hpp +include/arbor/util/visibility.hpp +include/arbor/version.hpp +include/arborenv/arbenvexcept.hpp +include/arborenv/concurrency.hpp +include/arborenv/default_env.hpp +include/arborenv/export.hpp +include/arborenv/gpu_env.hpp +include/arborenv/with_mpi.hpp +include/arborio/cableio.hpp +include/arborio/cv_policy_parse.hpp +include/arborio/export.hpp +include/arborio/label_parse.hpp +include/arborio/neurolucida.hpp +include/arborio/neuroml.hpp +include/arborio/swcio.hpp +include/arborio/xml.hpp +lib/cmake/arbor/arbor-config-version.cmake +lib/cmake/arbor/arbor-config.cmake +lib/cmake/arbor/arbor-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/arbor/arbor-targets.cmake +lib/libarbor.so +lib/libarborenv.so +lib/libarborio.so +%%DATADIR%%/BuildModules.cmake