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Sun, 13 Nov 2022 02:37:11 GMT (envelope-from git) Date: Sun, 13 Nov 2022 02:37:11 GMT Message-Id: <202211130237.2AD2bBjs040342@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Joseph Mingrone Subject: git: a875dde83e05 - main - biology/paml: Update to 4.10.6 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jrm X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: a875dde83e05c32752b096808e6b3ca50088a8a3 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jrm: URL: https://cgit.FreeBSD.org/ports/commit/?id=a875dde83e05c32752b096808e6b3ca50088a8a3 commit a875dde83e05c32752b096808e6b3ca50088a8a3 Author: Joseph Mingrone AuthorDate: 2022-11-13 02:35:29 +0000 Commit: Joseph Mingrone CommitDate: 2022-11-13 02:35:29 +0000 biology/paml: Update to 4.10.6 https://github.com/abacus-gene/paml/releases/tag/v4.10.6 Sponsored by: The FreeBSD Foundation --- biology/paml/Makefile | 2 +- biology/paml/distinfo | 6 +++--- biology/paml/pkg-plist | 13 ++----------- 3 files changed, 6 insertions(+), 15 deletions(-) diff --git a/biology/paml/Makefile b/biology/paml/Makefile index 7286939f9132..6a0b8081fd19 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -1,6 +1,6 @@ PORTNAME= paml DISTVERSIONPREFIX= v -DISTVERSION= 4.10.5 +DISTVERSION= 4.10.6 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org diff --git a/biology/paml/distinfo b/biology/paml/distinfo index f52a021a50de..f597c10ced71 100644 --- a/biology/paml/distinfo +++ b/biology/paml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1661485713 -SHA256 (abacus-gene-paml-v4.10.5_GH0.tar.gz) = 1bb40ea7c976d961a4f46b76e950423f6f252d7060bc621cbf29c9743b88a063 -SIZE (abacus-gene-paml-v4.10.5_GH0.tar.gz) = 3393889 +TIMESTAMP = 1668305503 +SHA256 (abacus-gene-paml-v4.10.6_GH0.tar.gz) = d6437f04ee233209e1ded83addbfe65d1363185877a03ba7924ce81f9ebc7777 +SIZE (abacus-gene-paml-v4.10.6_GH0.tar.gz) = 3386016 diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist index 8ba55f7dfe03..aac062f86730 100644 --- a/biology/paml/pkg-plist +++ b/biology/paml/pkg-plist @@ -165,18 +165,9 @@ bin/yn00 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtCDNAape/mtCDNAape.trees %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtCDNAape/mtCDNAape.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtprim9.nuc -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/codeml-M0.ctl -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/myxovirus.aln -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/myxovirus.tree -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata-maintree.trees -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata.trees -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata.txt -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/README.txt -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata-maintree-ml.ctl -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata-maintree.ctl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-mc.trees +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-mc.txt %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata.ctl -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata-maintree-ml.ctl -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata-maintree.ctl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata.ctl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pamp.ctl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/paupblock