git: 31c941c09e26 - main - devel/R-cran-msm: adding Multi-State Markov and Hidden Markov Models in Continuous Time

The branch main has been updated by thierry:

URL: https://cgit.FreeBSD.org/ports/commit/?id=31c941c09e26577b5dd107009766d7951ca10fd6

commit 31c941c09e26577b5dd107009766d7951ca10fd6
Author:     Thierry Thomas <thierry@FreeBSD.org>
AuthorDate: 2022-05-02 20:03:22 +0000
Commit:     Thierry Thomas <thierry@FreeBSD.org>
CommitDate: 2022-05-04 20:32:14 +0000

    devel/R-cran-msm: adding Multi-State Markov and Hidden Markov Models in Continuous Time
---
 devel/Makefile             |  1 +
 devel/R-cran-msm/Makefile  | 18 ++++++++++++++++++
 devel/R-cran-msm/distinfo  |  3 +++
 devel/R-cran-msm/pkg-descr |  9 +++++++++
 devel/R-cran-msm/pkg-plist | 40 ++++++++++++++++++++++++++++++++++++++++
 5 files changed, 71 insertions(+)

diff --git a/devel/Makefile b/devel/Makefile
index 26086cb3dea5..0a60bf7782e1 100644
--- a/devel/Makefile
+++ b/devel/Makefile
@@ -75,6 +75,7 @@
     SUBDIR += R-cran-memoise
     SUBDIR += R-cran-microbenchmark
     SUBDIR += R-cran-mockery
+    SUBDIR += R-cran-msm
     SUBDIR += R-cran-optparse
     SUBDIR += R-cran-pak
     SUBDIR += R-cran-parallelly
diff --git a/devel/R-cran-msm/Makefile b/devel/R-cran-msm/Makefile
new file mode 100644
index 000000000000..1ac0548de6f2
--- /dev/null
+++ b/devel/R-cran-msm/Makefile
@@ -0,0 +1,18 @@
+# Created by: Thierry Thomas <thierry@pompo.net>
+
+PORTNAME=	msm
+PORTVERSION=	1.6.9
+CATEGORIES=	devel
+DISTNAME=	${PORTNAME}_${DISTVERSION}
+
+MAINTAINER=	thierry@FreeBSD.org
+COMMENT=	Multi-State Markov and Hidden Markov Models in Continuous Time
+
+LICENSE=	GPLv2+
+
+RUN_DEPENDS=	R-cran-expm>0:math/R-cran-expm	\
+		R-cran-mvtnorm>0:math/R-cran-mvtnorm
+
+USES=		cran:compiles
+
+.include <bsd.port.mk>
diff --git a/devel/R-cran-msm/distinfo b/devel/R-cran-msm/distinfo
new file mode 100644
index 000000000000..0418c1abf2ca
--- /dev/null
+++ b/devel/R-cran-msm/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1651521129
+SHA256 (msm_1.6.9.tar.gz) = aefcd9bb40b0167311d088d6fe23fdf7aa35deaac0f8b47ef02377cff5577023
+SIZE (msm_1.6.9.tar.gz) = 847034
diff --git a/devel/R-cran-msm/pkg-descr b/devel/R-cran-msm/pkg-descr
new file mode 100644
index 000000000000..529d5b1809e5
--- /dev/null
+++ b/devel/R-cran-msm/pkg-descr
@@ -0,0 +1,9 @@
+Functions for fitting continuous-time Markov and hidden Markov multi-state
+models to longitudinal data. Designed for processes observed at arbitrary times
+in continuous time (panel data) but some other observation schemes are
+supported. Both Markov transition rates and the hidden Markov output process can
+be modelled in terms of covariates, which may be constant or piecewise-constant
+in time.
+
+WWW: https://cran.r-project.org/package=msm
+WWW: https://github.com/chjackson/msm
diff --git a/devel/R-cran-msm/pkg-plist b/devel/R-cran-msm/pkg-plist
new file mode 100644
index 000000000000..600bfd804b3d
--- /dev/null
+++ b/devel/R-cran-msm/pkg-plist
@@ -0,0 +1,40 @@
+%%R_MOD_DIR%%/CITATION
+%%R_MOD_DIR%%/DESCRIPTION
+%%R_MOD_DIR%%/INDEX
+%%R_MOD_DIR%%/Meta/Rd.rds
+%%R_MOD_DIR%%/Meta/data.rds
+%%R_MOD_DIR%%/Meta/features.rds
+%%R_MOD_DIR%%/Meta/hsearch.rds
+%%R_MOD_DIR%%/Meta/links.rds
+%%R_MOD_DIR%%/Meta/nsInfo.rds
+%%R_MOD_DIR%%/Meta/package.rds
+%%R_MOD_DIR%%/Meta/vignette.rds
+%%R_MOD_DIR%%/NAMESPACE
+%%R_MOD_DIR%%/NEWS
+%%R_MOD_DIR%%/R/msm
+%%R_MOD_DIR%%/R/msm.rdb
+%%R_MOD_DIR%%/R/msm.rdx
+%%R_MOD_DIR%%/data/Rdata.rdb
+%%R_MOD_DIR%%/data/Rdata.rds
+%%R_MOD_DIR%%/data/Rdata.rdx
+%%R_MOD_DIR%%/doc/index.html
+%%R_MOD_DIR%%/doc/msm-manual.R
+%%R_MOD_DIR%%/doc/msm-manual.pdf
+%%R_MOD_DIR%%/help/AnIndex
+%%R_MOD_DIR%%/help/aliases.rds
+%%R_MOD_DIR%%/help/msm.rdb
+%%R_MOD_DIR%%/help/msm.rdx
+%%R_MOD_DIR%%/help/paths.rds
+%%R_MOD_DIR%%/html/00Index.html
+%%R_MOD_DIR%%/html/R.css
+%%R_MOD_DIR%%/libs/msm.so
+%%R_MOD_DIR%%/tests/test_base.R
+%%R_MOD_DIR%%/tests/testthat/helper.r
+%%R_MOD_DIR%%/tests/testthat/test_analyticp.r
+%%R_MOD_DIR%%/tests/testthat/test_datasumm.r
+%%R_MOD_DIR%%/tests/testthat/test_deriv.r
+%%R_MOD_DIR%%/tests/testthat/test_models.r
+%%R_MOD_DIR%%/tests/testthat/test_models_hmm.r
+%%R_MOD_DIR%%/tests/testthat/test_models_hmmmulti.r
+%%R_MOD_DIR%%/tests/testthat/test_models_misc.r
+%%R_MOD_DIR%%/tests/testthat/test_utils.r