git: a2b4a671a27e - main - science/dakota: Update 6.15.0 -> 6.16.0

Reply: Colin Percival : "Re: git: a2b4a671a27e - main - science/dakota: Update 6.15.0 -> 6.16.0"
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From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Thu, 16 Jun 2022 18:24:48 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=a2b4a671a27e794667c0d175432d2ef4bf3ffcc1

commit a2b4a671a27e794667c0d175432d2ef4bf3ffcc1
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-06-16 18:24:10 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-06-16 18:24:44 +0000

    science/dakota: Update 6.15.0 -> 6.16.0
---
 science/dakota/Makefile                            | 18 ++++++++-----
 science/dakota/distinfo                            |  6 ++---
 science/dakota/files/patch-DakotaBoostDLLimport    | 30 ++++++++++++++++++++++
 .../patch-packages_external_sciplot_SciPlot.c      | 22 ----------------
 science/dakota/pkg-plist                           | 16 ++++++++++++
 5 files changed, 60 insertions(+), 32 deletions(-)

diff --git a/science/dakota/Makefile b/science/dakota/Makefile
index 824252641ab1..bc86b5c8a94d 100644
--- a/science/dakota/Makefile
+++ b/science/dakota/Makefile
@@ -1,6 +1,5 @@
 PORTNAME=	dakota
-DISTVERSION=	6.15.0
-PORTREVISION=	2
+DISTVERSION=	6.16.0
 CATEGORIES=	science
 MASTER_SITES=	https://dakota.sandia.gov/sites/default/files/distributions/public/
 DISTNAME=	${PORTNAME}-${DISTVERSION}-public-src-cli
@@ -15,15 +14,20 @@ LICENSE_FILE=	${WRKSRC}/LICENSE
 BUILD_DEPENDS=	nanoflann>0:math/nanoflann
 LIB_DEPENDS=	libblas.so:math/blas \
 		libboost_system.so:devel/boost-libs \
+		libexpat.so:textproc/expat2 \
+		libfontconfig.so:x11-fonts/fontconfig \
+		libfreetype.so:print/freetype2 \
 		libgsl.so:math/gsl \
 		libhdf5.so:science/hdf5 \
+		libicui18n.so:devel/icu \
 		liblapack.so:math/lapack \
 		libnlopt.so:math/nlopt \
-		libsz.so:science/libaec
+		libpng16.so:graphics/png \
+		libsz.so:science/szip
 RUN_DEPENDS=	bash:shells/bash
 
-USES=		cmake compiler:c++11-lang fortran motif perl5 pkgconfig python shebangfix xorg
-USE_XORG=	ice sm x11 xau xdmcp xext xft xmu xrender xt
+USES=		cmake compiler:c++11-lang fortran gettext-runtime jpeg motif perl5 pkgconfig python shebangfix xorg
+USE_XORG=	ice sm x11 xau xcb xdmcp xext xft xmu xrender xt
 USE_LDCONFIG=	yes
 
 USE_GITHUB=	nodefault
@@ -50,13 +54,13 @@ CMAKE_ON+=	DAKOTA_HAVE_GSL DAKOTA_HAVE_HDF5
 CMAKE_OFF=	DAKOTA_ENABLE_TESTS
 CMAKE_ARGS=	-DDakota_VERSION_SRC:STRING=${DISTVERSION} -DDakota_GIT_REVL:STRING=unknown -DDakota_RELEASE_DATE:${STRING}=20211115 \
 		-DPython_EXECUTABLE=${PYTHON_CMD} \
-		-DMUQ_STANMATH_DIR=${WRKSRC}/stanmath
+		-DMUQ_STANMATH_DIR=${WRKSRC}/stanmath \
+		-DPython_EXECUTABLE=${PYTHON_CMD}
 
 FFLAGS+=	-fallow-argument-mismatch
 LDFLAGS+=	-lexecinfo
 
 CONFLICTS_BUILD=	dakota # self: picks up some bundled packages from the pre-installed dakota package and then fails to install them
-CONFLICTS_INSTALL=	openblas
 
 post-extract:
 	@${FIND} ${WRKSRC} -name "*.orig" -delete
diff --git a/science/dakota/distinfo b/science/dakota/distinfo
index 49d3033add70..04dbc6a736aa 100644
--- a/science/dakota/distinfo
+++ b/science/dakota/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1643858651
-SHA256 (dakota-6.15.0-public-src-cli.tar.gz) = b6d971b7d6fe913aa64fef29cf8fcf55d0e5339f9f55fb164e3cc38716b48f61
-SIZE (dakota-6.15.0-public-src-cli.tar.gz) = 125618819
+TIMESTAMP = 1655340859
+SHA256 (dakota-6.16.0-public-src-cli.tar.gz) = 49684ade2a937465d85b0fc69c96408be38bc1603ed2e7e8156d93eee3567d2f
+SIZE (dakota-6.16.0-public-src-cli.tar.gz) = 124726774
 SHA256 (stan-dev-math-v2.18.0_GH0.tar.gz) = 53fbce2b28aea76695af7a91f51fdd356367153fc42b3573e2b91e6586eca91d
 SIZE (stan-dev-math-v2.18.0_GH0.tar.gz) = 17528084
diff --git a/science/dakota/files/patch-DakotaBoostDLLimport b/science/dakota/files/patch-DakotaBoostDLLimport
new file mode 100644
index 000000000000..3c1b4fbc2378
--- /dev/null
+++ b/science/dakota/files/patch-DakotaBoostDLLimport
@@ -0,0 +1,30 @@
+- patch from upstream received through the ML for latest Boost version issues.
+
+diff --git src/PluginInterface.cpp src/PluginInterface.cpp
+index 60f4008..953ad0e 100644
+--- src/PluginInterface.cpp
++++ src/PluginInterface.cpp
+@@ -13,6 +13,14 @@
+ #include <boost/dll/import.hpp>
+ #include <boost/filesystem.hpp>
+ 
++// Boost 1.76 and newer avoid the C++20 import keyword
++// RATIONALE: Using preprocessor as isolated to this compilation unit
++#if BOOST_VERSION >= 107600
++#define dakota_boost_dll_import boost::dll::import_symbol
++#else
++#define dakota_boost_dll_import boost::dll::import
++#endif
++
+ 
+ namespace Dakota {
+ 
+@@ -111,7 +119,7 @@ void PluginInterface::load_plugin()
+ {
+   if (pluginInterface) return;
+   try {
+-    pluginInterface = boost::dll::import<DakotaPlugins::DakotaInterfaceAPI>
++    pluginInterface = dakota_boost_dll_import<DakotaPlugins::DakotaInterfaceAPI>
+       (pluginPath,
+ 	 "dakota_interface_plugin"  // name of the symbol to import
+ 	 // TODO: append .dll, .so, .dylib via
diff --git a/science/dakota/files/patch-packages_external_sciplot_SciPlot.c b/science/dakota/files/patch-packages_external_sciplot_SciPlot.c
deleted file mode 100644
index 01edfb116b20..000000000000
--- a/science/dakota/files/patch-packages_external_sciplot_SciPlot.c
+++ /dev/null
@@ -1,22 +0,0 @@
-- reported to the ML on 2022-02-01
-
---- packages/external/sciplot/SciPlot.c.orig	2022-02-01 09:03:55 UTC
-+++ packages/external/sciplot/SciPlot.c
-@@ -3761,7 +3761,7 @@ realpair* SciPlotListReturnPtr (Widget wi, int idnum, 
-   SciPlotList *p;
-   SciPlotWidget w;
-   if (!XtIsSciPlot(wi))
--    return;
-+    return NULL;
-   w = (SciPlotWidget) wi;
- 
-   p = _ListFind(w, idnum);
-@@ -3792,7 +3792,7 @@ Boolean SciPlotQuickUpdateCheck (Widget wi)
- {
-   SciPlotWidget w;
-   if (!XtIsSciPlot(wi))
--    return;
-+    return NULL;
-   w = (SciPlotWidget) wi;
- 
-   return CheckMinMax(w);
diff --git a/science/dakota/pkg-plist b/science/dakota/pkg-plist
index 4d51517d9768..c013407552cd 100644
--- a/science/dakota/pkg-plist
+++ b/science/dakota/pkg-plist
@@ -31,6 +31,7 @@ include/APPSOptimizer.hpp
 include/ActiveKey.hpp
 include/ActiveSubspaceModel.hpp
 include/AdaptedBasisModel.hpp
+include/AdapterModel.hpp
 include/AlgorithmConfig.hpp
 include/AlgorithmConfig.hpp.inl
 include/AllOperators.hpp
@@ -136,6 +137,7 @@ include/DakotaConstraints.hpp
 include/DakotaEnvironment.hpp
 include/DakotaGraphics.hpp
 include/DakotaInterface.hpp
+include/DakotaInterfaceAPI.hpp
 include/DakotaIterator.hpp
 include/DakotaLeastSq.hpp
 include/DakotaMinimizer.hpp
@@ -219,6 +221,7 @@ include/EffGlobalMinimizer.hpp
 include/ElitistSelector.hpp
 include/ElitistSelector.hpp.inl
 include/EmbedHybridMetaIterator.hpp
+include/EnsembleSurrModel.hpp
 include/EqConstrainedLSQSolver.hpp
 include/EqualityConstraintType.hpp
 include/EqualityConstraintType.hpp.inl
@@ -476,6 +479,7 @@ include/MetricTrackerConvergerBase.hpp
 include/MetricTrackerConvergerBase.hpp.inl
 include/MinimizeObjectiveFunctionType.hpp
 include/MinimizeObjectiveFunctionType.hpp.inl
+include/MinimizerAdapterModel.hpp
 include/MixedVarConstraints.hpp
 include/MixedVariables.hpp
 include/MorseSmaleComplex.hpp
@@ -659,6 +663,7 @@ include/PecosApproximation.hpp
 include/PenaltyFitnessAssessorBase.hpp
 include/PenaltyFitnessAssessorBase.hpp.inl
 include/PiecewiseInterpPolynomial.hpp
+include/PluginInterface.hpp
 include/PluginParallelDirectApplicInterface.hpp
 include/PluginSerialDirectApplicInterface.hpp
 include/PoissonRandomVariable.hpp
@@ -2578,7 +2583,11 @@ lib/libutilities.so
 %%DATADIR%%/LICENSE
 %%DATADIR%%/LICENSE_HOPSPACK
 %%DATADIR%%/Python/dakota/__init__.py
+%%DATADIR%%/Python/dakota/__pycache__/__init__.cpython-36.pyc
 %%DATADIR%%/Python/dakota/interfacing/__init__.py
+%%DATADIR%%/Python/dakota/interfacing/__pycache__/__init__.cpython-36.pyc
+%%DATADIR%%/Python/dakota/interfacing/__pycache__/dprepro.cpython-36.pyc
+%%DATADIR%%/Python/dakota/interfacing/__pycache__/interfacing.cpython-36.pyc
 %%DATADIR%%/Python/dakota/interfacing/dprepro.py
 %%DATADIR%%/Python/dakota/interfacing/interfacing.py
 %%DATADIR%%/Python/dakota/interfacing/parallel.py
@@ -2596,3 +2605,10 @@ lib/libutilities.so
 %%DATADIR%%/examples/hopspack/5-multi-start/example5_params.txt
 %%DATADIR%%/examples/hopspack/5-multi-start/multi_start
 %%DATADIR%%/examples/hopspack/README.txt
+%%DATADIR%%/plugins/CMakeLists.txt
+%%DATADIR%%/plugins/DakotaInterfaceAPI.hpp
+%%DATADIR%%/plugins/DakotaPythonPlugin.cpp
+%%DATADIR%%/plugins/DakotaPythonPlugin.hpp
+%%DATADIR%%/plugins/PluginIdentityMap.cpp
+%%DATADIR%%/plugins/PluginIdentityMap.hpp
+%%DATADIR%%/plugins/dakota_symbol_visibility.hpp