From nobody Sun Apr 17 23:24:18 2022 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4C4E95D6021; Sun, 17 Apr 2022 23:24:19 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4KhR3Q6Swhz4TQj; Sun, 17 Apr 2022 23:24:18 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1650237859; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=uZSLT1jaYjvaN1NkYQJLxiMqW8MAOFM/j5AbH18yS24=; b=nTCjD6JwTbirkpcMmW66TzmcLloEPQlhm0tA83feDIFOxHoYRRsB6Z7YT8FqFe5wLQg1Zo eKMMCOHuE6LjvagQ+wwKBTyeCQvsj4sve+D7XCYpssWHSfuR2t8mJadrLexLPsWrvxZdJL D/PzJdnOeo/4clIRWyAHzxMcfXZCTDhDY2nybIpfgUqQn4G05ObUqRM6Q6HzmyzigGDrJr PaNHv1bKWV3oH9fTzHz1uNHZdvHMWyZhgCdK1fZo6EcPzJq0AqGVNyXjdlsG/1rag/eYxM pfdpJL8uJgTDs5+1jlHnDNQzROAWGdySXHP91tvbH+Twv1619g7wnR7Bdtmh4g== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 99257270C3; Sun, 17 Apr 2022 23:24:18 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 23HNOIKb085278; Sun, 17 Apr 2022 23:24:18 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 23HNOIKi085277; Sun, 17 Apr 2022 23:24:18 GMT (envelope-from git) Date: Sun, 17 Apr 2022 23:24:18 GMT Message-Id: <202204172324.23HNOIKi085277@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 6ba8180534b1 - main - misc/{,py-}xgboost: Update 1.5.2 -> 1.6.0 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 6ba8180534b1010593f9789bdbb758a889354390 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1650237859; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=uZSLT1jaYjvaN1NkYQJLxiMqW8MAOFM/j5AbH18yS24=; b=vW6M2/bgO+Y7wljpAAlzKYW9xRXWn5yJpnMiKQsZEyM9je9zN0vbmzfk2O8S2UAY+WIPLm TQ0GFPEB5aeNJRaXtOWTTwz6/PYnVCe23vAWxedjUKZaCwtBdoPHI2qudTIfhjI1olvQKA 36mA3WWug+emkjY9U3XpCC/vufI2rEOH8ryTYT6AGilCPX9YGklMtWlSPA6NaLNeXdC5TG MLCqNeIZSTEfY/LtvwqcHDMzcx5rTSszeykRS9z4Y2MNe89ASsAym2zbLtXjd+EaUIuFW5 OEMIEIMb8RW4mBo3LY/QCglcwh4CaUYx6rEIwnWKNfJavJLs66H8PM3EFmjF2A== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1650237859; a=rsa-sha256; cv=none; b=c3z8S5mDw0A02Wqp5RNm7FANG3qRHjwnyv2WUcZMxJzoyDonpGh1oJxC0U5TxwaCBXCuPx Ip5wsZZ/L4PGNMWRyPcwZ9jO6klpDuIyvZDHFHp7yJk/FG7QlHCujhJ8u6IYeuo74/ad/a bIOisZcKMdiAJuaK0glcggwY+5u9qS7KTj+o6KI3SxIN3Is7AU8OTLOTb/0Kk5pSD0tqXZ L6EJdQAumPuEG+qL1B4EYbT+2iIZujO3scRWxoOfVZJHS53oTHoH2TqeTYL1xtpoDVuxcq RQOcKWZ/ZJrJkg96lNUQlwpa1btgpFtvBu8yGB5nrMvCxK4zwnwoFqMrN4SXzA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=6ba8180534b1010593f9789bdbb758a889354390 commit 6ba8180534b1010593f9789bdbb758a889354390 Author: Yuri Victorovich AuthorDate: 2022-04-17 21:38:20 +0000 Commit: Yuri Victorovich CommitDate: 2022-04-17 23:24:12 +0000 misc/{,py-}xgboost: Update 1.5.2 -> 1.6.0 Reported by: portscout --- misc/py-xgboost/Makefile | 2 +- misc/py-xgboost/distinfo | 6 +- misc/py-xgboost/files/patch-2to3 | 375 ----------------------------- misc/py-xgboost/files/patch-CMakeLists.txt | 8 +- misc/py-xgboost/pkg-plist | 14 ++ misc/xgboost/Makefile | 2 +- misc/xgboost/distinfo | 6 +- misc/xgboost/files/patch-CMakeLists.txt | 26 +- misc/xgboost/pkg-plist | 2 + 9 files changed, 45 insertions(+), 396 deletions(-) diff --git a/misc/py-xgboost/Makefile b/misc/py-xgboost/Makefile index ecce53c63555..bbe49e906a87 100644 --- a/misc/py-xgboost/Makefile +++ b/misc/py-xgboost/Makefile @@ -1,6 +1,6 @@ PORTNAME= xgboost DISTVERSIONPREFIX= v -DISTVERSION= 1.5.2 +DISTVERSION= 1.6.0 CATEGORIES= misc # machine-learning PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/misc/py-xgboost/distinfo b/misc/py-xgboost/distinfo index 754ae83217d4..21125d76240c 100644 --- a/misc/py-xgboost/distinfo +++ b/misc/py-xgboost/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1643047834 -SHA256 (dmlc-xgboost-v1.5.2_GH0.tar.gz) = d77c71aa125bd7292cd670e5a575850d48aba03d1b05d75d791f3580748b1b0e -SIZE (dmlc-xgboost-v1.5.2_GH0.tar.gz) = 1645645 +TIMESTAMP = 1650230831 +SHA256 (dmlc-xgboost-v1.6.0_GH0.tar.gz) = 035706af59d842d03e23d6eb2c9a146ae7c2832f66aed2a4703b4c32209cce40 +SIZE (dmlc-xgboost-v1.6.0_GH0.tar.gz) = 1755620 diff --git a/misc/py-xgboost/files/patch-2to3 b/misc/py-xgboost/files/patch-2to3 deleted file mode 100644 index 54eac41ed210..000000000000 --- a/misc/py-xgboost/files/patch-2to3 +++ /dev/null @@ -1,375 +0,0 @@ ---- xgboost/callback.py.orig 2022-01-17 08:52:31 UTC -+++ xgboost/callback.py -@@ -319,7 +319,7 @@ def _aggcv(rlist): - cvmap[(metric_idx, k)].append(float(v)) - msg = idx - results = [] -- for (metric_idx, k), v in sorted(cvmap.items(), key=lambda x: x[0][0]): -+ for (metric_idx, k), v in sorted(list(cvmap.items()), key=lambda x: x[0][0]): - v = numpy.array(v) - if not isinstance(msg, STRING_TYPES): - msg = msg.decode() -@@ -595,10 +595,10 @@ class EarlyStopping(TrainingCallback): - evals_log: TrainingCallback.EvalsLog) -> bool: - epoch += self.starting_round # training continuation - msg = 'Must have at least 1 validation dataset for early stopping.' -- assert len(evals_log.keys()) >= 1, msg -+ assert len(list(evals_log.keys())) >= 1, msg - data_name = '' - if self.data: -- for d, _ in evals_log.items(): -+ for d, _ in list(evals_log.items()): - if d == self.data: - data_name = d - if not data_name: -@@ -672,8 +672,8 @@ class EvaluationMonitor(TrainingCallback): - - msg: str = f'[{epoch}]' - if rabit.get_rank() == self.printer_rank: -- for data, metric in evals_log.items(): -- for metric_name, log in metric.items(): -+ for data, metric in list(evals_log.items()): -+ for metric_name, log in list(metric.items()): - stdv: Optional[float] = None - if isinstance(log[-1], tuple): - score = log[-1][0] ---- xgboost/compat.py.orig 2022-01-17 08:52:31 UTC -+++ xgboost/compat.py -@@ -48,14 +48,14 @@ except ImportError: - - # sklearn - try: -- from sklearn.base import BaseEstimator -- from sklearn.base import RegressorMixin, ClassifierMixin -- from sklearn.preprocessing import LabelEncoder -+ from .sklearn.base import BaseEstimator -+ from .sklearn.base import RegressorMixin, ClassifierMixin -+ from .sklearn.preprocessing import LabelEncoder - - try: -- from sklearn.model_selection import KFold, StratifiedKFold -+ from .sklearn.model_selection import KFold, StratifiedKFold - except ImportError: -- from sklearn.cross_validation import KFold, StratifiedKFold -+ from .sklearn.cross_validation import KFold, StratifiedKFold - - SKLEARN_INSTALLED = True - -@@ -71,7 +71,7 @@ try: - def to_json(self): - '''Returns a JSON compatible dictionary''' - meta = {} -- for k, v in self.__dict__.items(): -+ for k, v in list(self.__dict__.items()): - if isinstance(v, np.ndarray): - meta[k] = v.tolist() - else: -@@ -82,7 +82,7 @@ try: - # pylint: disable=attribute-defined-outside-init - '''Load the encoder back from a JSON compatible dict.''' - meta = {} -- for k, v in doc.items(): -+ for k, v in list(doc.items()): - if k == 'classes_': - self.classes_ = np.array(v) - continue ---- xgboost/core.py.orig 2022-01-17 08:52:31 UTC -+++ xgboost/core.py -@@ -142,7 +142,7 @@ def _expect(expectations, got): - - def _log_callback(msg: bytes) -> None: - """Redirect logs from native library into Python console""" -- print(py_str(msg)) -+ print((py_str(msg))) - - - def _get_log_callback_func(): -@@ -479,7 +479,7 @@ def _deprecate_positional_args(f): - kwonly_args = [] - all_args = [] - -- for name, param in sig.parameters.items(): -+ for name, param in list(sig.parameters.items()): - if param.kind == Parameter.POSITIONAL_OR_KEYWORD: - all_args.append(name) - elif param.kind == Parameter.KEYWORD_ONLY: -@@ -1346,7 +1346,7 @@ class Booster(object): - def _configure_metrics(self, params: Union[Dict, List]) -> Union[Dict, List]: - if isinstance(params, dict) and 'eval_metric' in params \ - and isinstance(params['eval_metric'], list): -- params = dict((k, v) for k, v in params.items()) -+ params = dict((k, v) for k, v in list(params.items())) - eval_metrics = params['eval_metric'] - params.pop("eval_metric", None) - params = list(params.items()) -@@ -1577,7 +1577,7 @@ class Booster(object): - **kwargs - The attributes to set. Setting a value to None deletes an attribute. - """ -- for key, value in kwargs.items(): -+ for key, value in list(kwargs.items()): - if value is not None: - if not isinstance(value, STRING_TYPES): - raise ValueError("Set Attr only accepts string values") -@@ -1650,7 +1650,7 @@ class Booster(object): - value of the specified parameter, when params is str key - """ - if isinstance(params, Mapping): -- params = params.items() -+ params = list(params.items()) - elif isinstance(params, STRING_TYPES) and value is not None: - params = [(params, value)] - for key, val in params: ---- xgboost/dask.py.orig 2022-01-17 08:52:31 UTC -+++ xgboost/dask.py -@@ -49,9 +49,9 @@ from .sklearn import _cls_predict_proba - from .sklearn import XGBRanker - - if TYPE_CHECKING: -- from dask import dataframe as dd -- from dask import array as da -- import dask -+ from .dask import dataframe as dd -+ from .dask import array as da -+ from . import dask - import distributed - else: - dd = LazyLoader('dd', globals(), 'dask.dataframe') -@@ -152,7 +152,7 @@ def _start_tracker(n_workers: int) -> Dict[str, Any]: - - def _assert_dask_support() -> None: - try: -- import dask # pylint: disable=W0621,W0611 -+ from . import dask # pylint: disable=W0621,W0611 - except ImportError as e: - raise ImportError( - "Dask needs to be installed in order to use this module" -@@ -394,7 +394,7 @@ class DaskDMatrix: - # [(x0, x1, ..), (y0, y1, ..), ..] in delayed form - - # delay the zipped result -- parts = list(map(dask.delayed, zip(*parts))) # pylint: disable=no-member -+ parts = list(map(dask.delayed, list(zip(*parts)))) # pylint: disable=no-member - # At this point, the mental model should look like: - # [(x0, y0, ..), (x1, y1, ..), ..] in delayed form - -@@ -414,7 +414,7 @@ class DaskDMatrix: - - worker_map: Dict[str, "distributed.Future"] = defaultdict(list) - -- for key, workers in who_has.items(): -+ for key, workers in list(who_has.items()): - worker_map[next(iter(workers))].append(key_to_partition[key]) - - self.worker_map = worker_map -@@ -803,7 +803,7 @@ def _dmatrix_from_list_of_parts( - async def _get_rabit_args(n_workers: int, client: "distributed.Client") -> List[bytes]: - '''Get rabit context arguments from data distribution in DaskDMatrix.''' - env = await client.run_on_scheduler(_start_tracker, n_workers) -- rabit_args = [f"{k}={v}".encode() for k, v in env.items()] -+ rabit_args = [f"{k}={v}".encode() for k, v in list(env.items())] - return rabit_args - - # train and predict methods are supposed to be "functional", which meets the -@@ -930,7 +930,7 @@ async def _train_async( - - results = await client.gather(futures, asynchronous=True) - -- return list(filter(lambda ret: ret is not None, results))[0] -+ return list([ret for ret in results if ret is not None])[0] - - - def train( # pylint: disable=unused-argument -@@ -1579,7 +1579,7 @@ class DaskScikitLearnBase(XGBModel): - - def __getstate__(self) -> Dict: - this = self.__dict__.copy() -- if "_client" in this.keys(): -+ if "_client" in list(this.keys()): - del this["_client"] - return this - -@@ -1711,7 +1711,7 @@ class DaskXGBRegressor(DaskScikitLearnBase, XGBRegress - callbacks: Optional[List[TrainingCallback]] = None, - ) -> "DaskXGBRegressor": - _assert_dask_support() -- args = {k: v for k, v in locals().items() if k not in ("self", "__class__")} -+ args = {k: v for k, v in list(locals().items()) if k not in ("self", "__class__")} - return self._client_sync(self._fit_async, **args) - - -@@ -1814,7 +1814,7 @@ class DaskXGBClassifier(DaskScikitLearnBase, XGBClassi - callbacks: Optional[List[TrainingCallback]] = None - ) -> "DaskXGBClassifier": - _assert_dask_support() -- args = {k: v for k, v in locals().items() if k not in ("self", "__class__")} -+ args = {k: v for k, v in list(locals().items()) if k not in ("self", "__class__")} - return self._client_sync(self._fit_async, **args) - - async def _predict_proba_async( -@@ -2002,7 +2002,7 @@ class DaskXGBRanker(DaskScikitLearnBase, XGBRankerMixI - callbacks: Optional[List[TrainingCallback]] = None - ) -> "DaskXGBRanker": - _assert_dask_support() -- args = {k: v for k, v in locals().items() if k not in ("self", "__class__")} -+ args = {k: v for k, v in list(locals().items()) if k not in ("self", "__class__")} - return self._client_sync(self._fit_async, **args) - - # FIXME(trivialfis): arguments differ due to additional parameters like group and qid. -@@ -2067,7 +2067,7 @@ class DaskXGBRFRegressor(DaskXGBRegressor): - callbacks: Optional[List[TrainingCallback]] = None - ) -> "DaskXGBRFRegressor": - _assert_dask_support() -- args = {k: v for k, v in locals().items() if k not in ("self", "__class__")} -+ args = {k: v for k, v in list(locals().items()) if k not in ("self", "__class__")} - _check_rf_callback(early_stopping_rounds, callbacks) - super().fit(**args) - return self -@@ -2131,7 +2131,7 @@ class DaskXGBRFClassifier(DaskXGBClassifier): - callbacks: Optional[List[TrainingCallback]] = None - ) -> "DaskXGBRFClassifier": - _assert_dask_support() -- args = {k: v for k, v in locals().items() if k not in ("self", "__class__")} -+ args = {k: v for k, v in list(locals().items()) if k not in ("self", "__class__")} - _check_rf_callback(early_stopping_rounds, callbacks) - super().fit(**args) - return self ---- xgboost/plotting.py.orig 2022-01-17 08:52:31 UTC -+++ xgboost/plotting.py -@@ -81,7 +81,7 @@ def plot_importance(booster, ax=None, height=0.2, - tuples = sorted(tuples, key=lambda x: x[1])[-max_num_features:] - else: - tuples = sorted(tuples, key=lambda x: x[1]) -- labels, values = zip(*tuples) -+ labels, values = list(zip(*tuples)) - - if ax is None: - _, ax = plt.subplots(1, 1) -@@ -177,13 +177,13 @@ def to_graphviz(booster, fmap='', num_trees=0, rankdir - # squash everything back into kwargs again for compatibility - parameters = 'dot' - extra = {} -- for key, value in kwargs.items(): -+ for key, value in list(kwargs.items()): - extra[key] = value - - if rankdir is not None: - kwargs['graph_attrs'] = {} - kwargs['graph_attrs']['rankdir'] = rankdir -- for key, value in extra.items(): -+ for key, value in list(extra.items()): - if kwargs.get("graph_attrs", None) is not None: - kwargs['graph_attrs'][key] = value - else: ---- xgboost/sklearn.py.orig 2022-01-17 08:52:31 UTC -+++ xgboost/sklearn.py -@@ -455,7 +455,7 @@ class XGBModel(XGBModelBase): - booster : a xgboost booster of underlying model - """ - if not self.__sklearn_is_fitted__(): -- from sklearn.exceptions import NotFittedError -+ from .sklearn.exceptions import NotFittedError - raise NotFittedError('need to call fit or load_model beforehand') - return self._Booster - -@@ -476,7 +476,7 @@ class XGBModel(XGBModelBase): - - # this concatenates kwargs into parameters, enabling `get_params` for - # obtaining parameters from keyword parameters. -- for key, value in params.items(): -+ for key, value in list(params.items()): - if hasattr(self, key): - setattr(self, key, value) - else: -@@ -526,14 +526,14 @@ class XGBModel(XGBModelBase): - internal = {} - while stack: - obj = stack.pop() -- for k, v in obj.items(): -+ for k, v in list(obj.items()): - if k.endswith('_param'): -- for p_k, p_v in v.items(): -+ for p_k, p_v in list(v.items()): - internal[p_k] = p_v - elif isinstance(v, dict): - stack.append(v) - -- for k, v in internal.items(): -+ for k, v in list(internal.items()): - if k in params and params[k] is None: - params[k] = parse_parameter(v) - except ValueError: -@@ -549,7 +549,7 @@ class XGBModel(XGBModelBase): - "enable_categorical" - } - filtered = {} -- for k, v in params.items(): -+ for k, v in list(params.items()): - if k not in wrapper_specific and not callable(v): - filtered[k] = v - return filtered -@@ -568,7 +568,7 @@ class XGBModel(XGBModelBase): - - def save_model(self, fname: Union[str, os.PathLike]) -> None: - meta = {} -- for k, v in self.__dict__.items(): -+ for k, v in list(self.__dict__.items()): - if k == '_le': - meta['_le'] = self._le.to_json() - continue -@@ -607,7 +607,7 @@ class XGBModel(XGBModelBase): - return - meta = json.loads(meta_str) - states = {} -- for k, v in meta.items(): -+ for k, v in list(meta.items()): - if k == '_le': - self._le = XGBoostLabelEncoder() - self._le.from_json(v) -@@ -660,7 +660,7 @@ class XGBModel(XGBModelBase): - - def _set_evaluation_result(self, evals_result: TrainingCallback.EvalsLog) -> None: - if evals_result: -- for val in evals_result.items(): -+ for val in list(evals_result.items()): - evals_result_key = list(val[1].keys())[0] - evals_result[val[0]][evals_result_key] = val[1][evals_result_key] - self.evals_result_ = evals_result -@@ -1455,7 +1455,7 @@ class XGBRFClassifier(XGBClassifier): - feature_weights: Optional[array_like] = None, - callbacks: Optional[List[TrainingCallback]] = None - ) -> "XGBRFClassifier": -- args = {k: v for k, v in locals().items() if k not in ("self", "__class__")} -+ args = {k: v for k, v in list(locals().items()) if k not in ("self", "__class__")} - _check_rf_callback(early_stopping_rounds, callbacks) - super().fit(**args) - return self -@@ -1526,7 +1526,7 @@ class XGBRFRegressor(XGBRegressor): - feature_weights: Optional[array_like] = None, - callbacks: Optional[List[TrainingCallback]] = None - ) -> "XGBRFRegressor": -- args = {k: v for k, v in locals().items() if k not in ("self", "__class__")} -+ args = {k: v for k, v in list(locals().items()) if k not in ("self", "__class__")} - _check_rf_callback(early_stopping_rounds, callbacks) - super().fit(**args) - return self ---- xgboost/training.py.orig 2022-01-17 08:52:31 UTC -+++ xgboost/training.py -@@ -452,7 +452,7 @@ def cv(params, dtrain, num_boost_round=10, nfold=3, st - if 'eval_metric' in params: - params['eval_metric'] = _metrics - else: -- params = dict((k, v) for k, v in params.items()) -+ params = dict((k, v) for k, v in list(params.items())) - - if (not metrics) and 'eval_metric' in params: - if isinstance(params['eval_metric'], list): -@@ -506,7 +506,7 @@ def cv(params, dtrain, num_boost_round=10, nfold=3, st - results[key + '-std'].append(std) - - if should_break: -- for k in results.keys(): # pylint: disable=consider-iterating-dictionary -+ for k in list(results.keys()): # pylint: disable=consider-iterating-dictionary - results[k] = results[k][:(booster.best_iteration + 1)] - break - if as_pandas: diff --git a/misc/py-xgboost/files/patch-CMakeLists.txt b/misc/py-xgboost/files/patch-CMakeLists.txt index 4b498a226047..593bcfbf2b9d 100644 --- a/misc/py-xgboost/files/patch-CMakeLists.txt +++ b/misc/py-xgboost/files/patch-CMakeLists.txt @@ -17,10 +17,10 @@ if (BUILD_STATIC_LIB AND (R_LIB OR JVM_BINDINGS)) message(SEND_ERROR "Cannot build a static library libxgboost.a when R or JVM packages are enabled.") endif (BUILD_STATIC_LIB AND (R_LIB OR JVM_BINDINGS)) -@@ -160,7 +160,7 @@ endif (USE_NCCL) - - # dmlc-core - msvc_use_static_runtime() +@@ -168,7 +168,7 @@ msvc_use_static_runtime() + if (FORCE_SHARED_CRT) + set(DMLC_FORCE_SHARED_CRT ON) + endif () -add_subdirectory(${xgboost_SOURCE_DIR}/dmlc-core) +#add_subdirectory(${xgboost_SOURCE_DIR}/dmlc-core) diff --git a/misc/py-xgboost/pkg-plist b/misc/py-xgboost/pkg-plist new file mode 100644 index 000000000000..1ddb5b1777da --- /dev/null +++ b/misc/py-xgboost/pkg-plist @@ -0,0 +1,14 @@ +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/_typing%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/callback%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/compat%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/config%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/core%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/dask%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/data%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/libpath%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/plotting%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/rabit%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/sklearn%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/tracker%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/xgboost/__pycache__/training%%PYTHON_EXT_SUFFIX%%.pyc diff --git a/misc/xgboost/Makefile b/misc/xgboost/Makefile index 50678d11d2ec..3cd910c0192e 100644 --- a/misc/xgboost/Makefile +++ b/misc/xgboost/Makefile @@ -1,6 +1,6 @@ PORTNAME= xgboost DISTVERSIONPREFIX= v -DISTVERSION= 1.5.2 +DISTVERSION= 1.6.0 CATEGORIES= misc # machine-learning MAINTAINER= yuri@FreeBSD.org diff --git a/misc/xgboost/distinfo b/misc/xgboost/distinfo index 9dcec333530f..2ec1e3eb3c43 100644 --- a/misc/xgboost/distinfo +++ b/misc/xgboost/distinfo @@ -1,6 +1,6 @@ -TIMESTAMP = 1643047765 -SHA256 (dmlc-xgboost-v1.5.2_GH0.tar.gz) = d77c71aa125bd7292cd670e5a575850d48aba03d1b05d75d791f3580748b1b0e -SIZE (dmlc-xgboost-v1.5.2_GH0.tar.gz) = 1645645 +TIMESTAMP = 1650229980 +SHA256 (dmlc-xgboost-v1.6.0_GH0.tar.gz) = 035706af59d842d03e23d6eb2c9a146ae7c2832f66aed2a4703b4c32209cce40 +SIZE (dmlc-xgboost-v1.6.0_GH0.tar.gz) = 1755620 SHA256 (NVlabs-cub-af39ee2_GH0.tar.gz) = 3444f1d0af16d3680bf5089c1a91e707769d946580b80f12463860366fb6884b SIZE (NVlabs-cub-af39ee2_GH0.tar.gz) = 413215 SHA256 (rapidsai-gputreeshap-5bba198_GH0.tar.gz) = bad0d98eddff46e298f4c6be71b140ac8573b2d1740f109f3151097c56f18463 diff --git a/misc/xgboost/files/patch-CMakeLists.txt b/misc/xgboost/files/patch-CMakeLists.txt index 7fbe42423d27..97097cd460c6 100644 --- a/misc/xgboost/files/patch-CMakeLists.txt +++ b/misc/xgboost/files/patch-CMakeLists.txt @@ -1,6 +1,6 @@ ---- CMakeLists.txt.orig 2021-10-15 04:21:04 UTC +--- CMakeLists.txt.orig 2022-04-16 00:43:21 UTC +++ CMakeLists.txt -@@ -104,11 +104,11 @@ endif (PLUGIN_RMM AND NOT ((CMAKE_CXX_COMPILER_ID STRE +@@ -105,11 +105,11 @@ endif (PLUGIN_RMM AND NOT ((CMAKE_CXX_COMPILER_ID STRE if (PLUGIN_RMM AND NOT (CMAKE_SYSTEM_NAME STREQUAL "Linux")) message(SEND_ERROR "`PLUGIN_RMM` must be used with Linux.") endif (PLUGIN_RMM AND NOT (CMAKE_SYSTEM_NAME STREQUAL "Linux")) @@ -17,16 +17,16 @@ if (BUILD_STATIC_LIB AND (R_LIB OR JVM_BINDINGS)) message(SEND_ERROR "Cannot build a static library libxgboost.a when R or JVM packages are enabled.") endif (BUILD_STATIC_LIB AND (R_LIB OR JVM_BINDINGS)) -@@ -160,7 +160,7 @@ endif (USE_NCCL) - - # dmlc-core - msvc_use_static_runtime() +@@ -168,7 +168,7 @@ msvc_use_static_runtime() + if (FORCE_SHARED_CRT) + set(DMLC_FORCE_SHARED_CRT ON) + endif () -add_subdirectory(${xgboost_SOURCE_DIR}/dmlc-core) +#add_subdirectory(${xgboost_SOURCE_DIR}/dmlc-core) if (MSVC) if (TARGET dmlc_unit_tests) -@@ -177,7 +177,7 @@ endif (RABIT_BUILD_MPI) +@@ -185,7 +185,7 @@ endif (RABIT_BUILD_MPI) # core xgboost add_subdirectory(${xgboost_SOURCE_DIR}/src) @@ -35,7 +35,15 @@ # Exports some R specific definitions and objects if (R_LIB) -@@ -218,7 +218,7 @@ set_target_properties(runxgboost PROPERTIES OUTPUT_NAM +@@ -219,14 +219,14 @@ target_link_libraries(runxgboost PRIVATE objxgboost) + target_include_directories(runxgboost + PRIVATE + ${xgboost_SOURCE_DIR}/include +- ${xgboost_SOURCE_DIR}/dmlc-core/include ++ #${xgboost_SOURCE_DIR}/dmlc-core/include + ${xgboost_SOURCE_DIR}/rabit/include + ) + set_target_properties(runxgboost PROPERTIES OUTPUT_NAME xgboost) #-- End CLI for xgboost # Common setup for all targets @@ -44,7 +52,7 @@ xgboost_target_properties(${target}) xgboost_target_link_libraries(${target}) xgboost_target_defs(${target}) -@@ -269,7 +269,7 @@ install(DIRECTORY ${xgboost_SOURCE_DIR}/include/xgboos +@@ -277,7 +277,7 @@ install(DIRECTORY ${xgboost_SOURCE_DIR}/include/xgboos # # https://github.com/dmlc/xgboost/issues/6085 if (BUILD_STATIC_LIB) diff --git a/misc/xgboost/pkg-plist b/misc/xgboost/pkg-plist index 3b9b92585a29..b04d4dc1b24b 100644 --- a/misc/xgboost/pkg-plist +++ b/misc/xgboost/pkg-plist @@ -20,6 +20,8 @@ include/xgboost/objective.h include/xgboost/parameter.h include/xgboost/predictor.h include/xgboost/span.h +include/xgboost/string_view.h +include/xgboost/task.h include/xgboost/tree_model.h include/xgboost/tree_updater.h include/xgboost/version_config.h