git: c74d9767d204 - main - biology/bwa: Unbreak on most non-x86 platforms using simde

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=c74d9767d204035f671225a70227a2b24ecb2491

commit c74d9767d204035f671225a70227a2b24ecb2491
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2021-12-01 14:55:49 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2021-12-01 14:56:30 +0000

    biology/bwa: Unbreak on most non-x86 platforms using simde
---
 biology/bwa/Makefile          | 11 ++++-------
 biology/bwa/files/patch-ksw.c | 13 +++++++++++++
 2 files changed, 17 insertions(+), 7 deletions(-)

diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile
index a6302394411c..5075bda611bc 100644
--- a/biology/bwa/Makefile
+++ b/biology/bwa/Makefile
@@ -1,6 +1,7 @@
 PORTNAME=	bwa
 PORTVERSION=	0.7.17
 DISTVERSIONPREFIX=v
+PORTREVISION=	1
 CATEGORIES=	biology
 
 PATCH_SITES=	https://github.com/lh3/bwa/commit/
@@ -11,16 +12,12 @@ COMMENT=	Burrows-Wheeler sequence aligner
 
 LICENSE=	GPLv3
 
-# From 0.7.9a: Recheck for 0.7.17.
-BROKEN_aarch64=		fails to compile: invalid conversion between vector type and integer type
-BROKEN_armv6=		fails to compile: invalid conversion between vector type and integer type
-BROKEN_armv7=		fails to compile: invalid conversion between vector type and integer type
 BROKEN_mips=		fails to compile: cc1: unrecognized command line option "-msse2"
 BROKEN_mips64=		fails to compile: cc1: unrecognized command line option "-msse2"
-BROKEN_powerpc64=	fails to compile: ksw.c: emmintrin.h: No such file or directory
-BROKEN_riscv64=		fails to compile: invalid conversion between vector type and integer type
 
-USES=		gmake perl5 shebangfix tar:bzip2
+BUILD_DEPENDS=	simde>0:devel/simde
+
+USES=		gmake localbase perl5 shebangfix tar:bzip2
 SHEBANG_FILES=	qualfa2fq.pl xa2multi.pl
 USE_PERL5=	run
 
diff --git a/biology/bwa/files/patch-ksw.c b/biology/bwa/files/patch-ksw.c
new file mode 100644
index 000000000000..c86cabf2e497
--- /dev/null
+++ b/biology/bwa/files/patch-ksw.c
@@ -0,0 +1,13 @@
+--- ksw.c.orig	2021-12-01 13:48:35 UTC
++++ ksw.c
+@@ -26,7 +26,9 @@
+ #include <stdlib.h>
+ #include <stdint.h>
+ #include <assert.h>
+-#include <emmintrin.h>
++// #include <emmintrin.h>
++#define SIMDE_ENABLE_NATIVE_ALIASES
++#include <simde/x86/sse2.h>
+ #include "ksw.h"
+ 
+ #ifdef USE_MALLOC_WRAPPERS