svn commit: r303275 - in vendor/libdivsufsort: . dist dist/CMakeModules dist/examples dist/include dist/lib dist/pkgconfig
Xin LI
delphij at FreeBSD.org
Sun Jul 24 20:39:46 UTC 2016
Author: delphij
Date: Sun Jul 24 20:39:43 2016
New Revision: 303275
URL: https://svnweb.freebsd.org/changeset/base/303275
Log:
Vendor import of libdivsufsort, a software library that implements
a lightweight suffix array construction algorithm.
Obtained from: https://github.com/y-256/libdivsufsort
Added:
vendor/libdivsufsort/
vendor/libdivsufsort/dist/
vendor/libdivsufsort/dist/.gitignore
vendor/libdivsufsort/dist/CHANGELOG.md
vendor/libdivsufsort/dist/CMakeLists.txt (contents, props changed)
vendor/libdivsufsort/dist/CMakeModules/
vendor/libdivsufsort/dist/CMakeModules/AppendCompilerFlags.cmake
vendor/libdivsufsort/dist/CMakeModules/CheckFunctionKeywords.cmake
vendor/libdivsufsort/dist/CMakeModules/CheckLFS.cmake
vendor/libdivsufsort/dist/CMakeModules/ProjectCPack.cmake
vendor/libdivsufsort/dist/CMakeModules/cmake_uninstall.cmake.in (contents, props changed)
vendor/libdivsufsort/dist/LICENSE
vendor/libdivsufsort/dist/README.md
vendor/libdivsufsort/dist/VERSION.cmake
vendor/libdivsufsort/dist/examples/
vendor/libdivsufsort/dist/examples/CMakeLists.txt (contents, props changed)
vendor/libdivsufsort/dist/examples/bwt.c (contents, props changed)
vendor/libdivsufsort/dist/examples/mksary.c (contents, props changed)
vendor/libdivsufsort/dist/examples/sasearch.c (contents, props changed)
vendor/libdivsufsort/dist/examples/suftest.c (contents, props changed)
vendor/libdivsufsort/dist/examples/unbwt.c (contents, props changed)
vendor/libdivsufsort/dist/include/
vendor/libdivsufsort/dist/include/CMakeLists.txt (contents, props changed)
vendor/libdivsufsort/dist/include/config.h.cmake
vendor/libdivsufsort/dist/include/divsufsort.h.cmake
vendor/libdivsufsort/dist/include/divsufsort_private.h (contents, props changed)
vendor/libdivsufsort/dist/include/lfs.h.cmake
vendor/libdivsufsort/dist/lib/
vendor/libdivsufsort/dist/lib/CMakeLists.txt (contents, props changed)
vendor/libdivsufsort/dist/lib/divsufsort.c (contents, props changed)
vendor/libdivsufsort/dist/lib/sssort.c (contents, props changed)
vendor/libdivsufsort/dist/lib/trsort.c (contents, props changed)
vendor/libdivsufsort/dist/lib/utils.c (contents, props changed)
vendor/libdivsufsort/dist/pkgconfig/
vendor/libdivsufsort/dist/pkgconfig/CMakeLists.txt (contents, props changed)
vendor/libdivsufsort/dist/pkgconfig/libdivsufsort.pc.cmake
Added: vendor/libdivsufsort/dist/.gitignore
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/.gitignore Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,32 @@
+# Object files
+*.o
+*.ko
+*.obj
+*.elf
+
+# Precompiled Headers
+*.gch
+*.pch
+
+# Libraries
+*.lib
+*.a
+*.la
+*.lo
+
+# Shared objects (inc. Windows DLLs)
+*.dll
+*.so
+*.so.*
+*.dylib
+
+# Executables
+*.exe
+*.out
+*.app
+*.i*86
+*.x86_64
+*.hex
+
+# CMake files/directories
+build/
Added: vendor/libdivsufsort/dist/CHANGELOG.md
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/CHANGELOG.md Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,21 @@
+# libdivsufsort Change Log
+
+See full changelog at: https://github.com/y-256/libdivsufsort/commits
+
+## [2.0.1] - 2010-11-11
+### Fixed
+* Wrong variable used in `divbwt` function
+* Enclose some string variables with double quotation marks in include/CMakeLists.txt
+* Fix typo in include/CMakeLists.txt
+
+## 2.0.0 - 2008-08-23
+### Changed
+* Switch the build system to [CMake](http://www.cmake.org/)
+* Improve the performance of the suffix-sorting algorithm
+
+### Added
+* OpenMP support
+* 64-bit version of divsufsort
+
+[Unreleased]: https://github.com/y-256/libdivsufsort/compare/2.0.1...HEAD
+[2.0.1]: https://github.com/y-256/libdivsufsort/compare/2.0.0...2.0.1
Added: vendor/libdivsufsort/dist/CMakeLists.txt
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/CMakeLists.txt Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,99 @@
+### cmake file for building libdivsufsort Package ###
+cmake_minimum_required(VERSION 2.4.4)
+set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/CMakeModules")
+include(AppendCompilerFlags)
+
+## Project information ##
+project(libdivsufsort C)
+set(PROJECT_VENDOR "Yuta Mori")
+set(PROJECT_CONTACT "yuta.256 at gmail.com")
+set(PROJECT_URL "https://github.com/y-256/libdivsufsort")
+set(PROJECT_DESCRIPTION "A lightweight suffix sorting library")
+include(VERSION.cmake)
+
+## CPack configuration ##
+set(CPACK_GENERATOR "TGZ;TBZ2;ZIP")
+set(CPACK_SOURCE_GENERATOR "TGZ;TBZ2;ZIP")
+include(ProjectCPack)
+
+## Project options ##
+option(BUILD_SHARED_LIBS "Set to OFF to build static libraries" ON)
+option(BUILD_EXAMPLES "Build examples" ON)
+option(BUILD_DIVSUFSORT64 "Build libdivsufsort64" OFF)
+option(USE_OPENMP "Use OpenMP for parallelization" OFF)
+option(WITH_LFS "Enable Large File Support" ON)
+
+## Installation directories ##
+set(LIB_SUFFIX "" CACHE STRING "Define suffix of directory name (32 or 64)")
+
+set(CMAKE_INSTALL_RUNTIMEDIR "" CACHE PATH "Specify the output directory for dll runtimes (default is bin)")
+if(NOT CMAKE_INSTALL_RUNTIMEDIR)
+ set(CMAKE_INSTALL_RUNTIMEDIR "${CMAKE_INSTALL_PREFIX}/bin")
+endif(NOT CMAKE_INSTALL_RUNTIMEDIR)
+
+set(CMAKE_INSTALL_LIBDIR "" CACHE PATH "Specify the output directory for libraries (default is lib)")
+if(NOT CMAKE_INSTALL_LIBDIR)
+ set(CMAKE_INSTALL_LIBDIR "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}")
+endif(NOT CMAKE_INSTALL_LIBDIR)
+
+set(CMAKE_INSTALL_INCLUDEDIR "" CACHE PATH "Specify the output directory for header files (default is include)")
+if(NOT CMAKE_INSTALL_INCLUDEDIR)
+ set(CMAKE_INSTALL_INCLUDEDIR "${CMAKE_INSTALL_PREFIX}/include")
+endif(NOT CMAKE_INSTALL_INCLUDEDIR)
+
+set(CMAKE_INSTALL_PKGCONFIGDIR "" CACHE PATH "Specify the output directory for pkgconfig files (default is lib/pkgconfig)")
+if(NOT CMAKE_INSTALL_PKGCONFIGDIR)
+ set(CMAKE_INSTALL_PKGCONFIGDIR "${CMAKE_INSTALL_LIBDIR}/pkgconfig")
+endif(NOT CMAKE_INSTALL_PKGCONFIGDIR)
+
+## Build type ##
+if(NOT CMAKE_BUILD_TYPE)
+ set(CMAKE_BUILD_TYPE "Release")
+elseif(CMAKE_BUILD_TYPE STREQUAL "Debug")
+ set(CMAKE_VERBOSE_MAKEFILE ON)
+endif(NOT CMAKE_BUILD_TYPE)
+
+## Compiler options ##
+if(MSVC)
+ append_c_compiler_flags("/W4" "VC" CMAKE_C_FLAGS)
+ append_c_compiler_flags("/Oi;/Ot;/Ox;/Oy" "VC" CMAKE_C_FLAGS_RELEASE)
+ if(USE_OPENMP)
+ append_c_compiler_flags("/openmp" "VC" CMAKE_C_FLAGS)
+ endif(USE_OPENMP)
+elseif(BORLAND)
+ append_c_compiler_flags("-w" "BCC" CMAKE_C_FLAGS)
+ append_c_compiler_flags("-Oi;-Og;-Os;-Ov;-Ox" "BCC" CMAKE_C_FLAGS_RELEASE)
+else(MSVC)
+ if(CMAKE_COMPILER_IS_GNUCC)
+ append_c_compiler_flags("-Wall" "GCC" CMAKE_C_FLAGS)
+ append_c_compiler_flags("-fomit-frame-pointer" "GCC" CMAKE_C_FLAGS_RELEASE)
+ if(USE_OPENMP)
+ append_c_compiler_flags("-fopenmp" "GCC" CMAKE_C_FLAGS)
+ endif(USE_OPENMP)
+ else(CMAKE_COMPILER_IS_GNUCC)
+ append_c_compiler_flags("-Wall" "UNKNOWN" CMAKE_C_FLAGS)
+ append_c_compiler_flags("-fomit-frame-pointer" "UNKNOWN" CMAKE_C_FLAGS_RELEASE)
+ if(USE_OPENMP)
+ append_c_compiler_flags("-fopenmp;-openmp;-omp" "UNKNOWN" CMAKE_C_FLAGS)
+ endif(USE_OPENMP)
+ endif(CMAKE_COMPILER_IS_GNUCC)
+endif(MSVC)
+
+## Add definitions ##
+add_definitions(-DHAVE_CONFIG_H=1 -D__STDC_LIMIT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS)
+
+## Add subdirectories ##
+add_subdirectory(pkgconfig)
+add_subdirectory(include)
+add_subdirectory(lib)
+if(BUILD_EXAMPLES)
+ add_subdirectory(examples)
+endif(BUILD_EXAMPLES)
+
+## Add 'uninstall' target ##
+CONFIGURE_FILE(
+ "${CMAKE_CURRENT_SOURCE_DIR}/CMakeModules/cmake_uninstall.cmake.in"
+ "${CMAKE_CURRENT_BINARY_DIR}/CMakeModules/cmake_uninstall.cmake"
+ IMMEDIATE @ONLY)
+ADD_CUSTOM_TARGET(uninstall
+ "${CMAKE_COMMAND}" -P "${CMAKE_CURRENT_BINARY_DIR}/CMakeModules/cmake_uninstall.cmake")
Added: vendor/libdivsufsort/dist/CMakeModules/AppendCompilerFlags.cmake
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/CMakeModules/AppendCompilerFlags.cmake Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,38 @@
+include(CheckCSourceCompiles)
+include(CheckCXXSourceCompiles)
+
+macro(append_c_compiler_flags _flags _name _result)
+ set(SAFE_CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS})
+ string(REGEX REPLACE "[-+/ ]" "_" cname "${_name}")
+ string(TOUPPER "${cname}" cname)
+ foreach(flag ${_flags})
+ string(REGEX REPLACE "^[-+/ ]+(.*)[-+/ ]*$" "\\1" flagname "${flag}")
+ string(REGEX REPLACE "[-+/ ]" "_" flagname "${flagname}")
+ string(TOUPPER "${flagname}" flagname)
+ set(have_flag "HAVE_${cname}_${flagname}")
+ set(CMAKE_REQUIRED_FLAGS "${flag}")
+ check_c_source_compiles("int main() { return 0; }" ${have_flag})
+ if(${have_flag})
+ set(${_result} "${${_result}} ${flag}")
+ endif(${have_flag})
+ endforeach(flag)
+ set(CMAKE_REQUIRED_FLAGS ${SAFE_CMAKE_REQUIRED_FLAGS})
+endmacro(append_c_compiler_flags)
+
+macro(append_cxx_compiler_flags _flags _name _result)
+ set(SAFE_CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS})
+ string(REGEX REPLACE "[-+/ ]" "_" cname "${_name}")
+ string(TOUPPER "${cname}" cname)
+ foreach(flag ${_flags})
+ string(REGEX REPLACE "^[-+/ ]+(.*)[-+/ ]*$" "\\1" flagname "${flag}")
+ string(REGEX REPLACE "[-+/ ]" "_" flagname "${flagname}")
+ string(TOUPPER "${flagname}" flagname)
+ set(have_flag "HAVE_${cname}_${flagname}")
+ set(CMAKE_REQUIRED_FLAGS "${flag}")
+ check_cxx_source_compiles("int main() { return 0; }" ${have_flag})
+ if(${have_flag})
+ set(${_result} "${${_result}} ${flag}")
+ endif(${have_flag})
+ endforeach(flag)
+ set(CMAKE_REQUIRED_FLAGS ${SAFE_CMAKE_REQUIRED_FLAGS})
+endmacro(append_cxx_compiler_flags)
Added: vendor/libdivsufsort/dist/CMakeModules/CheckFunctionKeywords.cmake
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/CMakeModules/CheckFunctionKeywords.cmake Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,15 @@
+include(CheckCSourceCompiles)
+
+macro(check_function_keywords _wordlist)
+ set(${_result} "")
+ foreach(flag ${_wordlist})
+ string(REGEX REPLACE "[-+/ ()]" "_" flagname "${flag}")
+ string(TOUPPER "${flagname}" flagname)
+ set(have_flag "HAVE_${flagname}")
+ check_c_source_compiles("${flag} void func(); void func() { } int main() { func(); return 0; }" ${have_flag})
+ if(${have_flag} AND NOT ${_result})
+ set(${_result} "${flag}")
+# break()
+ endif(${have_flag} AND NOT ${_result})
+ endforeach(flag)
+endmacro(check_function_keywords)
Added: vendor/libdivsufsort/dist/CMakeModules/CheckLFS.cmake
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/CMakeModules/CheckLFS.cmake Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,109 @@
+## Checks for large file support ##
+include(CheckIncludeFile)
+include(CheckSymbolExists)
+include(CheckTypeSize)
+
+macro(check_lfs _isenable)
+ set(LFS_OFF_T "")
+ set(LFS_FOPEN "")
+ set(LFS_FSEEK "")
+ set(LFS_FTELL "")
+ set(LFS_PRID "")
+
+ if(${_isenable})
+ set(SAFE_CMAKE_REQUIRED_DEFINITIONS "${CMAKE_REQUIRED_DEFINITIONS}")
+ set(CMAKE_REQUIRED_DEFINITIONS ${CMAKE_REQUIRED_DEFINITIONS}
+ -D_LARGEFILE_SOURCE -D_LARGE_FILES -D_FILE_OFFSET_BITS=64
+ -D__STDC_LIMIT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS)
+
+ check_include_file("sys/types.h" HAVE_SYS_TYPES_H)
+ check_include_file("inttypes.h" HAVE_INTTYPES_H)
+ check_include_file("stddef.h" HAVE_STDDEF_H)
+ check_include_file("stdint.h" HAVE_STDINT_H)
+
+ # LFS type1: 8 <= sizeof(off_t), fseeko, ftello
+ check_type_size("off_t" SIZEOF_OFF_T)
+ if(SIZEOF_OFF_T GREATER 7)
+ check_symbol_exists("fseeko" "stdio.h" HAVE_FSEEKO)
+ check_symbol_exists("ftello" "stdio.h" HAVE_FTELLO)
+ if(HAVE_FSEEKO AND HAVE_FTELLO)
+ set(LFS_OFF_T "off_t")
+ set(LFS_FOPEN "fopen")
+ set(LFS_FSEEK "fseeko")
+ set(LFS_FTELL "ftello")
+ check_symbol_exists("PRIdMAX" "inttypes.h" HAVE_PRIDMAX)
+ if(HAVE_PRIDMAX)
+ set(LFS_PRID "PRIdMAX")
+ else(HAVE_PRIDMAX)
+ check_type_size("long" SIZEOF_LONG)
+ check_type_size("int" SIZEOF_INT)
+ if(SIZEOF_OFF_T GREATER SIZEOF_LONG)
+ set(LFS_PRID "\"lld\"")
+ elseif(SIZEOF_LONG GREATER SIZEOF_INT)
+ set(LFS_PRID "\"ld\"")
+ else(SIZEOF_OFF_T GREATER SIZEOF_LONG)
+ set(LFS_PRID "\"d\"")
+ endif(SIZEOF_OFF_T GREATER SIZEOF_LONG)
+ endif(HAVE_PRIDMAX)
+ endif(HAVE_FSEEKO AND HAVE_FTELLO)
+ endif(SIZEOF_OFF_T GREATER 7)
+
+ # LFS type2: 8 <= sizeof(off64_t), fopen64, fseeko64, ftello64
+ if(NOT LFS_OFF_T)
+ check_type_size("off64_t" SIZEOF_OFF64_T)
+ if(SIZEOF_OFF64_T GREATER 7)
+ check_symbol_exists("fopen64" "stdio.h" HAVE_FOPEN64)
+ check_symbol_exists("fseeko64" "stdio.h" HAVE_FSEEKO64)
+ check_symbol_exists("ftello64" "stdio.h" HAVE_FTELLO64)
+ if(HAVE_FOPEN64 AND HAVE_FSEEKO64 AND HAVE_FTELLO64)
+ set(LFS_OFF_T "off64_t")
+ set(LFS_FOPEN "fopen64")
+ set(LFS_FSEEK "fseeko64")
+ set(LFS_FTELL "ftello64")
+ check_symbol_exists("PRIdMAX" "inttypes.h" HAVE_PRIDMAX)
+ if(HAVE_PRIDMAX)
+ set(LFS_PRID "PRIdMAX")
+ else(HAVE_PRIDMAX)
+ check_type_size("long" SIZEOF_LONG)
+ check_type_size("int" SIZEOF_INT)
+ if(SIZEOF_OFF64_T GREATER SIZEOF_LONG)
+ set(LFS_PRID "\"lld\"")
+ elseif(SIZEOF_LONG GREATER SIZEOF_INT)
+ set(LFS_PRID "\"ld\"")
+ else(SIZEOF_OFF64_T GREATER SIZEOF_LONG)
+ set(LFS_PRID "\"d\"")
+ endif(SIZEOF_OFF64_T GREATER SIZEOF_LONG)
+ endif(HAVE_PRIDMAX)
+ endif(HAVE_FOPEN64 AND HAVE_FSEEKO64 AND HAVE_FTELLO64)
+ endif(SIZEOF_OFF64_T GREATER 7)
+ endif(NOT LFS_OFF_T)
+
+ # LFS type3: 8 <= sizeof(__int64), _fseeki64, _ftelli64
+ if(NOT LFS_OFF_T)
+ check_type_size("__int64" SIZEOF___INT64)
+ if(SIZEOF___INT64 GREATER 7)
+ check_symbol_exists("_fseeki64" "stdio.h" HAVE__FSEEKI64)
+ check_symbol_exists("_ftelli64" "stdio.h" HAVE__FTELLI64)
+ if(HAVE__FSEEKI64 AND HAVE__FTELLI64)
+ set(LFS_OFF_T "__int64")
+ set(LFS_FOPEN "fopen")
+ set(LFS_FSEEK "_fseeki64")
+ set(LFS_FTELL "_ftelli64")
+ set(LFS_PRID "\"I64d\"")
+ endif(HAVE__FSEEKI64 AND HAVE__FTELLI64)
+ endif(SIZEOF___INT64 GREATER 7)
+ endif(NOT LFS_OFF_T)
+
+ set(CMAKE_REQUIRED_DEFINITIONS "${SAFE_CMAKE_REQUIRED_DEFINITIONS}")
+ endif(${_isenable})
+
+ if(NOT LFS_OFF_T)
+ ## not found
+ set(LFS_OFF_T "long")
+ set(LFS_FOPEN "fopen")
+ set(LFS_FSEEK "fseek")
+ set(LFS_FTELL "ftell")
+ set(LFS_PRID "\"ld\"")
+ endif(NOT LFS_OFF_T)
+
+endmacro(check_lfs)
Added: vendor/libdivsufsort/dist/CMakeModules/ProjectCPack.cmake
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/CMakeModules/ProjectCPack.cmake Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,38 @@
+# If the cmake version includes cpack, use it
+IF(EXISTS "${CMAKE_ROOT}/Modules/CPack.cmake")
+ SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "${PROJECT_DESCRIPTION}")
+ SET(CPACK_PACKAGE_VENDOR "${PROJECT_VENDOR}")
+ SET(CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/README.md")
+ SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/LICENSE")
+ SET(CPACK_PACKAGE_VERSION_MAJOR "${PROJECT_VERSION_MAJOR}")
+ SET(CPACK_PACKAGE_VERSION_MINOR "${PROJECT_VERSION_MINOR}")
+ SET(CPACK_PACKAGE_VERSION_PATCH "${PROJECT_VERSION_PATCH}")
+# SET(CPACK_PACKAGE_INSTALL_DIRECTORY "${PROJECT_NAME} ${PROJECT_VERSION}")
+ SET(CPACK_SOURCE_PACKAGE_FILE_NAME "${PROJECT_NAME}-${PROJECT_VERSION_FULL}")
+
+ IF(NOT DEFINED CPACK_SYSTEM_NAME)
+ SET(CPACK_SYSTEM_NAME "${CMAKE_SYSTEM_NAME}-${CMAKE_SYSTEM_PROCESSOR}")
+ ENDIF(NOT DEFINED CPACK_SYSTEM_NAME)
+
+ IF(${CPACK_SYSTEM_NAME} MATCHES Windows)
+ IF(CMAKE_CL_64)
+ SET(CPACK_SYSTEM_NAME win64-${CMAKE_SYSTEM_PROCESSOR})
+ ELSE(CMAKE_CL_64)
+ SET(CPACK_SYSTEM_NAME win32-${CMAKE_SYSTEM_PROCESSOR})
+ ENDIF(CMAKE_CL_64)
+ ENDIF(${CPACK_SYSTEM_NAME} MATCHES Windows)
+
+ IF(NOT DEFINED CPACK_PACKAGE_FILE_NAME)
+ SET(CPACK_PACKAGE_FILE_NAME "${CPACK_SOURCE_PACKAGE_FILE_NAME}-${CPACK_SYSTEM_NAME}")
+ ENDIF(NOT DEFINED CPACK_PACKAGE_FILE_NAME)
+
+ SET(CPACK_PACKAGE_CONTACT "${PROJECT_CONTACT}")
+ IF(UNIX)
+ SET(CPACK_STRIP_FILES "")
+ SET(CPACK_SOURCE_STRIP_FILES "")
+# SET(CPACK_PACKAGE_EXECUTABLES "ccmake" "CMake")
+ ENDIF(UNIX)
+ SET(CPACK_SOURCE_IGNORE_FILES "/CVS/" "/build/" "/\\\\.build/" "/\\\\.svn/" "~$")
+ # include CPack model once all variables are set
+ INCLUDE(CPack)
+ENDIF(EXISTS "${CMAKE_ROOT}/Modules/CPack.cmake")
Added: vendor/libdivsufsort/dist/CMakeModules/cmake_uninstall.cmake.in
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/CMakeModules/cmake_uninstall.cmake.in Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,36 @@
+IF(NOT EXISTS "@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt")
+ MESSAGE(FATAL_ERROR "Cannot find install manifest: \"@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt\"")
+ENDIF(NOT EXISTS "@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt")
+
+FILE(READ "@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt" files)
+STRING(REGEX REPLACE "\n" ";" files "${files}")
+
+SET(NUM 0)
+FOREACH(file ${files})
+ IF(EXISTS "$ENV{DESTDIR}${file}")
+ MESSAGE(STATUS "Looking for \"$ENV{DESTDIR}${file}\" - found")
+ SET(UNINSTALL_CHECK_${NUM} 1)
+ ELSE(EXISTS "$ENV{DESTDIR}${file}")
+ MESSAGE(STATUS "Looking for \"$ENV{DESTDIR}${file}\" - not found")
+ SET(UNINSTALL_CHECK_${NUM} 0)
+ ENDIF(EXISTS "$ENV{DESTDIR}${file}")
+ MATH(EXPR NUM "1 + ${NUM}")
+ENDFOREACH(file)
+
+SET(NUM 0)
+FOREACH(file ${files})
+ IF(${UNINSTALL_CHECK_${NUM}})
+ MESSAGE(STATUS "Uninstalling \"$ENV{DESTDIR}${file}\"")
+ EXEC_PROGRAM(
+ "@CMAKE_COMMAND@" ARGS "-E remove \"$ENV{DESTDIR}${file}\""
+ OUTPUT_VARIABLE rm_out
+ RETURN_VALUE rm_retval
+ )
+ IF(NOT "${rm_retval}" STREQUAL 0)
+ MESSAGE(FATAL_ERROR "Problem when removing \"$ENV{DESTDIR}${file}\"")
+ ENDIF(NOT "${rm_retval}" STREQUAL 0)
+ ENDIF(${UNINSTALL_CHECK_${NUM}})
+ MATH(EXPR NUM "1 + ${NUM}")
+ENDFOREACH(file)
+
+FILE(REMOVE "@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt")
Added: vendor/libdivsufsort/dist/LICENSE
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/LICENSE Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (c) 2003 Yuta Mori All rights reserved.
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
Added: vendor/libdivsufsort/dist/README.md
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/README.md Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,140 @@
+# libdivsufsort
+
+libdivsufsort is a software library that implements a lightweight suffix array construction algorithm.
+
+## News
+* 2015-03-21: The project has moved from [Google Code](http://code.google.com/p/libdivsufsort/) to [GitHub](https://github.com/y-256/libdivsufsort)
+
+## Introduction
+This library provides a simple and an efficient C API to construct a suffix array and a Burrows-Wheeler transformed string from a given string over a constant-size alphabet.
+The algorithm runs in O(n log n) worst-case time using only 5n+O(1) bytes of memory space, where n is the length of
+the string.
+
+## Build requirements
+* An ANSI C Compiler (e.g. GNU GCC)
+* [CMake](http://www.cmake.org/ "CMake") version 2.4.2 or newer
+* CMake-supported build tool
+
+## Building on GNU/Linux
+1. Get the source code from GitHub. You can either
+ * use git to clone the repository
+ ```
+ git clone https://github.com/y-256/libdivsufsort.git
+ ```
+ * or download a [zip file](../../archive/master.zip) directly
+2. Create a `build` directory in the package source directory.
+```shell
+$ cd libdivsufsort
+$ mkdir build
+$ cd build
+```
+3. Configure the package for your system.
+If you want to install to a different location, change the -DCMAKE_INSTALL_PREFIX option.
+```shell
+$ cmake -DCMAKE_BUILD_TYPE="Release" \
+-DCMAKE_INSTALL_PREFIX="/usr/local" ..
+```
+4. Compile the package.
+```shell
+$ make
+```
+5. (Optional) Install the library and header files.
+```shell
+$ sudo make install
+```
+
+## API
+```c
+/* Data types */
+typedef int32_t saint_t;
+typedef int32_t saidx_t;
+typedef uint8_t sauchar_t;
+
+/*
+ * Constructs the suffix array of a given string.
+ * @param T[0..n-1] The input string.
+ * @param SA[0..n-1] The output array or suffixes.
+ * @param n The length of the given string.
+ * @return 0 if no error occurred, -1 or -2 otherwise.
+ */
+saint_t
+divsufsort(const sauchar_t *T, saidx_t *SA, saidx_t n);
+
+/*
+ * Constructs the burrows-wheeler transformed string of a given string.
+ * @param T[0..n-1] The input string.
+ * @param U[0..n-1] The output string. (can be T)
+ * @param A[0..n-1] The temporary array. (can be NULL)
+ * @param n The length of the given string.
+ * @return The primary index if no error occurred, -1 or -2 otherwise.
+ */
+saidx_t
+divbwt(const sauchar_t *T, sauchar_t *U, saidx_t *A, saidx_t n);
+```
+
+## Example Usage
+```c
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+
+#include <divsufsort.h>
+
+int main() {
+ // intput data
+ char *Text = "abracadabra";
+ int n = strlen(Text);
+ int i, j;
+
+ // allocate
+ int *SA = (int *)malloc(n * sizeof(int));
+
+ // sort
+ divsufsort((unsigned char *)Text, SA, n);
+
+ // output
+ for(i = 0; i < n; ++i) {
+ printf("SA[%2d] = %2d: ", i, SA[i]);
+ for(j = SA[i]; j < n; ++j) {
+ printf("%c", Text[j]);
+ }
+ printf("$\n");
+ }
+
+ // deallocate
+ free(SA);
+
+ return 0;
+}
+```
+See the [examples](examples) directory for a few other examples.
+
+## Benchmarks
+See [Benchmarks](https://github.com/y-256/libdivsufsort/blob/wiki/SACA_Benchmarks.md) page for details.
+
+## License
+libdivsufsort is released under the [MIT license](LICENSE "MIT license").
+> The MIT License (MIT)
+>
+> Copyright (c) 2003 Yuta Mori All rights reserved.
+>
+> Permission is hereby granted, free of charge, to any person obtaining a copy
+> of this software and associated documentation files (the "Software"), to deal
+> in the Software without restriction, including without limitation the rights
+> to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+> copies of the Software, and to permit persons to whom the Software is
+> furnished to do so, subject to the following conditions:
+>
+> The above copyright notice and this permission notice shall be included in all
+> copies or substantial portions of the Software.
+>
+> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+> IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+> FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+> AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+> LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+> OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+> SOFTWARE.
+
+## Author
+* Yuta Mori
Added: vendor/libdivsufsort/dist/VERSION.cmake
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/VERSION.cmake Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,23 @@
+set(PROJECT_VERSION_MAJOR "2")
+set(PROJECT_VERSION_MINOR "0")
+set(PROJECT_VERSION_PATCH "2")
+set(PROJECT_VERSION_EXTRA "-1")
+set(PROJECT_VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}")
+set(PROJECT_VERSION_FULL "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}.${PROJECT_VERSION_PATCH}${PROJECT_VERSION_EXTRA}")
+
+set(LIBRARY_VERSION "3.0.1")
+set(LIBRARY_SOVERSION "3")
+
+## Git revision number ##
+if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/.git")
+ execute_process(COMMAND git describe --tags HEAD
+ WORKING_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}"
+ OUTPUT_VARIABLE GIT_DESCRIBE_TAGS ERROR_QUIET)
+ if(GIT_DESCRIBE_TAGS)
+ string(REGEX REPLACE "^v(.*)" "\\1" GIT_REVISION "${GIT_DESCRIBE_TAGS}")
+ string(STRIP "${GIT_REVISION}" GIT_REVISION)
+ if(GIT_REVISION)
+ set(PROJECT_VERSION_FULL "${GIT_REVISION}")
+ endif(GIT_REVISION)
+ endif(GIT_DESCRIBE_TAGS)
+endif(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/.git")
Added: vendor/libdivsufsort/dist/examples/CMakeLists.txt
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/examples/CMakeLists.txt Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,11 @@
+## Add definitions ##
+add_definitions(-D_LARGEFILE_SOURCE -D_LARGE_FILES -D_FILE_OFFSET_BITS=64)
+
+## Targets ##
+include_directories("${CMAKE_CURRENT_SOURCE_DIR}/../include"
+ "${CMAKE_CURRENT_BINARY_DIR}/../include")
+link_directories("${CMAKE_CURRENT_BINARY_DIR}/../lib")
+foreach(src suftest mksary sasearch bwt unbwt)
+ add_executable(${src} ${src}.c)
+ target_link_libraries(${src} divsufsort)
+endforeach(src)
Added: vendor/libdivsufsort/dist/examples/bwt.c
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/examples/bwt.c Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,220 @@
+/*
+ * bwt.c for libdivsufsort
+ * Copyright (c) 2003-2008 Yuta Mori All Rights Reserved.
+ *
+ * Permission is hereby granted, free of charge, to any person
+ * obtaining a copy of this software and associated documentation
+ * files (the "Software"), to deal in the Software without
+ * restriction, including without limitation the rights to use,
+ * copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the
+ * Software is furnished to do so, subject to the following
+ * conditions:
+ *
+ * The above copyright notice and this permission notice shall be
+ * included in all copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
+ * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
+ * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+ * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+ * OTHER DEALINGS IN THE SOFTWARE.
+ */
+
+#if HAVE_CONFIG_H
+# include "config.h"
+#endif
+#include <stdio.h>
+#if HAVE_STRING_H
+# include <string.h>
+#endif
+#if HAVE_STDLIB_H
+# include <stdlib.h>
+#endif
+#if HAVE_MEMORY_H
+# include <memory.h>
+#endif
+#if HAVE_STDDEF_H
+# include <stddef.h>
+#endif
+#if HAVE_STRINGS_H
+# include <strings.h>
+#endif
+#if HAVE_SYS_TYPES_H
+# include <sys/types.h>
+#endif
+#if HAVE_IO_H && HAVE_FCNTL_H
+# include <io.h>
+# include <fcntl.h>
+#endif
+#include <time.h>
+#include <divsufsort.h>
+#include "lfs.h"
+
+
+static
+size_t
+write_int(FILE *fp, saidx_t n) {
+ unsigned char c[4];
+ c[0] = (unsigned char)((n >> 0) & 0xff), c[1] = (unsigned char)((n >> 8) & 0xff),
+ c[2] = (unsigned char)((n >> 16) & 0xff), c[3] = (unsigned char)((n >> 24) & 0xff);
+ return fwrite(c, sizeof(unsigned char), 4, fp);
+}
+
+static
+void
+print_help(const char *progname, int status) {
+ fprintf(stderr,
+ "bwt, a burrows-wheeler transform program, version %s.\n",
+ divsufsort_version());
+ fprintf(stderr, "usage: %s [-b num] INFILE OUTFILE\n", progname);
+ fprintf(stderr, " -b num set block size to num MiB [1..512] (default: 32)\n\n");
+ exit(status);
+}
+
+int
+main(int argc, const char *argv[]) {
+ FILE *fp, *ofp;
+ const char *fname, *ofname;
+ sauchar_t *T;
+ saidx_t *SA;
+ LFS_OFF_T n;
+ size_t m;
+ saidx_t pidx;
+ clock_t start,finish;
+ saint_t i, blocksize = 32, needclose = 3;
+
+ /* Check arguments. */
+ if((argc == 1) ||
+ (strcmp(argv[1], "-h") == 0) ||
+ (strcmp(argv[1], "--help") == 0)) { print_help(argv[0], EXIT_SUCCESS); }
+ if((argc != 3) && (argc != 5)) { print_help(argv[0], EXIT_FAILURE); }
+ i = 1;
+ if(argc == 5) {
+ if(strcmp(argv[i], "-b") != 0) { print_help(argv[0], EXIT_FAILURE); }
+ blocksize = atoi(argv[i + 1]);
+ if(blocksize < 0) { blocksize = 1; }
+ else if(512 < blocksize) { blocksize = 512; }
+ i += 2;
+ }
+ blocksize <<= 20;
+
+ /* Open a file for reading. */
+ if(strcmp(argv[i], "-") != 0) {
+#if HAVE_FOPEN_S
+ if(fopen_s(&fp, fname = argv[i], "rb") != 0) {
+#else
+ if((fp = LFS_FOPEN(fname = argv[i], "rb")) == NULL) {
+#endif
+ fprintf(stderr, "%s: Cannot open file `%s': ", argv[0], fname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+ } else {
+#if HAVE__SETMODE && HAVE__FILENO
+ if(_setmode(_fileno(stdin), _O_BINARY) == -1) {
+ fprintf(stderr, "%s: Cannot set mode: ", argv[0]);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+#endif
+ fp = stdin;
+ fname = "stdin";
+ needclose ^= 1;
+ }
+ i += 1;
+
+ /* Open a file for writing. */
+ if(strcmp(argv[i], "-") != 0) {
+#if HAVE_FOPEN_S
+ if(fopen_s(&ofp, ofname = argv[i], "wb") != 0) {
+#else
+ if((ofp = LFS_FOPEN(ofname = argv[i], "wb")) == NULL) {
+#endif
+ fprintf(stderr, "%s: Cannot open file `%s': ", argv[0], ofname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+ } else {
+#if HAVE__SETMODE && HAVE__FILENO
+ if(_setmode(_fileno(stdout), _O_BINARY) == -1) {
+ fprintf(stderr, "%s: Cannot set mode: ", argv[0]);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+#endif
+ ofp = stdout;
+ ofname = "stdout";
+ needclose ^= 2;
+ }
+
+ /* Get the file size. */
+ if(LFS_FSEEK(fp, 0, SEEK_END) == 0) {
+ n = LFS_FTELL(fp);
+ rewind(fp);
+ if(n < 0) {
+ fprintf(stderr, "%s: Cannot ftell `%s': ", argv[0], fname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+ if(0x20000000L < n) { n = 0x20000000L; }
+ if((blocksize == 0) || (n < blocksize)) { blocksize = (saidx_t)n; }
+ } else if(blocksize == 0) { blocksize = 32 << 20; }
+
+ /* Allocate 5blocksize bytes of memory. */
+ T = (sauchar_t *)malloc(blocksize * sizeof(sauchar_t));
+ SA = (saidx_t *)malloc(blocksize * sizeof(saidx_t));
+ if((T == NULL) || (SA == NULL)) {
+ fprintf(stderr, "%s: Cannot allocate memory.\n", argv[0]);
+ exit(EXIT_FAILURE);
+ }
+
+ /* Write the blocksize. */
+ if(write_int(ofp, blocksize) != 4) {
+ fprintf(stderr, "%s: Cannot write to `%s': ", argv[0], ofname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+
+ fprintf(stderr, " BWT (blocksize %" PRIdSAINT_T ") ... ", blocksize);
+ start = clock();
+ for(n = 0; 0 < (m = fread(T, sizeof(sauchar_t), blocksize, fp)); n += m) {
+ /* Burrows-Wheeler Transform. */
+ pidx = divbwt(T, T, SA, m);
+ if(pidx < 0) {
+ fprintf(stderr, "%s (bw_transform): %s.\n",
+ argv[0],
+ (pidx == -1) ? "Invalid arguments" : "Cannot allocate memory");
+ exit(EXIT_FAILURE);
+ }
+
+ /* Write the bwted data. */
+ if((write_int(ofp, pidx) != 4) ||
+ (fwrite(T, sizeof(sauchar_t), m, ofp) != m)) {
+ fprintf(stderr, "%s: Cannot write to `%s': ", argv[0], ofname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+ }
+ if(ferror(fp)) {
+ fprintf(stderr, "%s: Cannot read from `%s': ", argv[0], fname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+ finish = clock();
+ fprintf(stderr, "%" PRIdOFF_T " bytes: %.4f sec\n",
+ n, (double)(finish - start) / (double)CLOCKS_PER_SEC);
+
+ /* Close files */
+ if(needclose & 1) { fclose(fp); }
+ if(needclose & 2) { fclose(ofp); }
+
+ /* Deallocate memory. */
+ free(SA);
+ free(T);
+
+ return 0;
+}
Added: vendor/libdivsufsort/dist/examples/mksary.c
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ vendor/libdivsufsort/dist/examples/mksary.c Sun Jul 24 20:39:43 2016 (r303275)
@@ -0,0 +1,193 @@
+/*
+ * mksary.c for libdivsufsort
+ * Copyright (c) 2003-2008 Yuta Mori All Rights Reserved.
+ *
+ * Permission is hereby granted, free of charge, to any person
+ * obtaining a copy of this software and associated documentation
+ * files (the "Software"), to deal in the Software without
+ * restriction, including without limitation the rights to use,
+ * copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the
+ * Software is furnished to do so, subject to the following
+ * conditions:
+ *
+ * The above copyright notice and this permission notice shall be
+ * included in all copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
+ * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
+ * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+ * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+ * OTHER DEALINGS IN THE SOFTWARE.
+ */
+
+#if HAVE_CONFIG_H
+# include "config.h"
+#endif
+#include <stdio.h>
+#if HAVE_STRING_H
+# include <string.h>
+#endif
+#if HAVE_STDLIB_H
+# include <stdlib.h>
+#endif
+#if HAVE_MEMORY_H
+# include <memory.h>
+#endif
+#if HAVE_STDDEF_H
+# include <stddef.h>
+#endif
+#if HAVE_STRINGS_H
+# include <strings.h>
+#endif
+#if HAVE_SYS_TYPES_H
+# include <sys/types.h>
+#endif
+#if HAVE_IO_H && HAVE_FCNTL_H
+# include <io.h>
+# include <fcntl.h>
+#endif
+#include <time.h>
+#include <divsufsort.h>
+#include "lfs.h"
+
+
+static
+void
+print_help(const char *progname, int status) {
+ fprintf(stderr,
+ "mksary, a simple suffix array builder, version %s.\n",
+ divsufsort_version());
+ fprintf(stderr, "usage: %s INFILE OUTFILE\n\n", progname);
+ exit(status);
+}
+
+int
+main(int argc, const char *argv[]) {
+ FILE *fp, *ofp;
+ const char *fname, *ofname;
+ sauchar_t *T;
+ saidx_t *SA;
+ LFS_OFF_T n;
+ clock_t start, finish;
+ saint_t needclose = 3;
+
+ /* Check arguments. */
+ if((argc == 1) ||
+ (strcmp(argv[1], "-h") == 0) ||
+ (strcmp(argv[1], "--help") == 0)) { print_help(argv[0], EXIT_SUCCESS); }
+ if(argc != 3) { print_help(argv[0], EXIT_FAILURE); }
+
+ /* Open a file for reading. */
+ if(strcmp(argv[1], "-") != 0) {
+#if HAVE_FOPEN_S
+ if(fopen_s(&fp, fname = argv[1], "rb") != 0) {
+#else
+ if((fp = LFS_FOPEN(fname = argv[1], "rb")) == NULL) {
+#endif
+ fprintf(stderr, "%s: Cannot open file `%s': ", argv[0], fname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+ } else {
+#if HAVE__SETMODE && HAVE__FILENO
+ if(_setmode(_fileno(stdin), _O_BINARY) == -1) {
+ fprintf(stderr, "%s: Cannot set mode: ", argv[0]);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+#endif
+ fp = stdin;
+ fname = "stdin";
+ needclose ^= 1;
+ }
+
+ /* Open a file for writing. */
+ if(strcmp(argv[2], "-") != 0) {
+#if HAVE_FOPEN_S
+ if(fopen_s(&ofp, ofname = argv[2], "wb") != 0) {
+#else
+ if((ofp = LFS_FOPEN(ofname = argv[2], "wb")) == NULL) {
+#endif
+ fprintf(stderr, "%s: Cannot open file `%s': ", argv[0], ofname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+ } else {
+#if HAVE__SETMODE && HAVE__FILENO
+ if(_setmode(_fileno(stdout), _O_BINARY) == -1) {
+ fprintf(stderr, "%s: Cannot set mode: ", argv[0]);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+#endif
+ ofp = stdout;
+ ofname = "stdout";
+ needclose ^= 2;
+ }
+
+ /* Get the file size. */
+ if(LFS_FSEEK(fp, 0, SEEK_END) == 0) {
+ n = LFS_FTELL(fp);
+ rewind(fp);
+ if(n < 0) {
+ fprintf(stderr, "%s: Cannot ftell `%s': ", argv[0], fname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+ if(0x7fffffff <= n) {
+ fprintf(stderr, "%s: Input file `%s' is too big.\n", argv[0], fname);
+ exit(EXIT_FAILURE);
+ }
+ } else {
+ fprintf(stderr, "%s: Cannot fseek `%s': ", argv[0], fname);
+ perror(NULL);
+ exit(EXIT_FAILURE);
+ }
+
+ /* Allocate 5blocksize bytes of memory. */
+ T = (sauchar_t *)malloc((size_t)n * sizeof(sauchar_t));
+ SA = (saidx_t *)malloc((size_t)n * sizeof(saidx_t));
+ if((T == NULL) || (SA == NULL)) {
+ fprintf(stderr, "%s: Cannot allocate memory.\n", argv[0]);
*** DIFF OUTPUT TRUNCATED AT 1000 LINES ***
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