svn commit: r525625 - head/biology/gatk
Yuri Victorovich
yuri at FreeBSD.org
Sun Feb 9 05:57:05 UTC 2020
Author: yuri
Date: Sun Feb 9 05:57:04 2020
New Revision: 525625
URL: https://svnweb.freebsd.org/changeset/ports/525625
Log:
biology/gatk: Change from gradle5 to gradle6
Modified:
head/biology/gatk/Makefile
head/biology/gatk/distinfo
Modified: head/biology/gatk/Makefile
==============================================================================
--- head/biology/gatk/Makefile Sun Feb 9 05:32:45 2020 (r525624)
+++ head/biology/gatk/Makefile Sun Feb 9 05:57:04 2020 (r525625)
@@ -2,6 +2,7 @@
PORTNAME= gatk
DISTVERSION= 4.1.4.1
+PORTREVISION= 1
CATEGORIES= biology java
EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
@@ -11,7 +12,7 @@ COMMENT= Variant discovery in high-throughput sequenci
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE.TXT
-BUILD_DEPENDS= gradle5:devel/gradle5
+BUILD_DEPENDS= gradle:devel/gradle
USES= gettext-runtime
USE_GITHUB= yes
@@ -23,7 +24,7 @@ SUB_LIST= PORTVERSION=${PORTVERSION} JAVA=${JAVA}
NO_ARCH= yes
-DEPS_CACHE_DIR= /tmp # should be ${WRKDIR}, but workaround for the gradle bug that dependency cache is not relocable: https://github.com/gradle/gradle/issues/1338
+DEPS_CACHE_DIR= ${WRKDIR}
PLIST_FILES= bin/${PORTNAME} \
${JAVAJARDIR}/GenomeAnalysisTK-${PORTVERSION}.jar
@@ -52,7 +53,7 @@ post-extract: # need a separate extract step because t
do-build:
- @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle5 \
+ @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \
--gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \
${GRADLE_ARGS} --build-cache localJar
Modified: head/biology/gatk/distinfo
==============================================================================
--- head/biology/gatk/distinfo Sun Feb 9 05:32:45 2020 (r525624)
+++ head/biology/gatk/distinfo Sun Feb 9 05:57:04 2020 (r525625)
@@ -1,5 +1,5 @@
-TIMESTAMP = 1579483921
-SHA256 (gatk-4.1.4.1-deps.tar.gz) = b634903f674aa1550039c4434e0ef0efab75d509e80d5073a2b5f3a0120fd68e
-SIZE (gatk-4.1.4.1-deps.tar.gz) = 253677476
+TIMESTAMP = 1581225116
+SHA256 (gatk-4.1.4.1-deps.tar.gz) = 498a0f827531b122ed8f7e789232548a6a4e61c0629ef103d90d06bed787db9e
+SIZE (gatk-4.1.4.1-deps.tar.gz) = 253086649
SHA256 (broadinstitute-gatk-4.1.4.1_GH0.tar.gz) = 54129c3973ad7f1c501ecd7c841d15cd09fdd0d5ca3057810c17d7b7b9d88eb7
SIZE (broadinstitute-gatk-4.1.4.1_GH0.tar.gz) = 64600068
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