svn commit: r511437 - head/biology/p5-BioPerl

[Sunpoet Po-Chuan Hsieh]

Author: sunpoet
Date: Sat Sep  7 22:44:02 2019
New Revision: 511437
URL: https://svnweb.freebsd.org/changeset/ports/511437

Log:
  Update to 1.007006 (1.7.6)
  
  - Remove PGTEST and SQLITETEST options: DBD::Pg and DBD::SQLite have been removed from BioPerl by upstream for the move of modules and programs into separate distributions
  
  Changes:	https://metacpan.org/changes/distribution/BioPerl

Modified:
  head/biology/p5-BioPerl/Makefile
  head/biology/p5-BioPerl/distinfo
  head/biology/p5-BioPerl/pkg-plist

Modified: head/biology/p5-BioPerl/Makefile
==============================================================================
--- head/biology/p5-BioPerl/Makefile	Sat Sep  7 22:43:57 2019	(r511436)
+++ head/biology/p5-BioPerl/Makefile	Sat Sep  7 22:44:02 2019	(r511437)
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	BioPerl
-PORTVERSION=	1.007005
-PORTREVISION=	1
+PORTVERSION=	1.007006
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 MASTER_SITE_SUBDIR=	CPAN:CDRAUG
@@ -18,10 +17,8 @@ LICENSE_COMB=	dual
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BUILD_DEPENDS=	${RUN_DEPENDS}
-RUN_DEPENDS=	p5-DBI>=0:databases/p5-DBI \
-		p5-Data-Stag>=0:devel/p5-Data-Stag \
+RUN_DEPENDS=	p5-Data-Stag>=0:devel/p5-Data-Stag \
 		p5-Error>=0:lang/p5-Error \
-		p5-GD>=0:graphics/p5-GD \
 		p5-Graph>=0:math/p5-Graph \
 		p5-HTTP-Message>=0:www/p5-HTTP-Message \
 		p5-IO-String>=0:devel/p5-IO-String \
@@ -52,16 +49,9 @@ USE_PERL5=	configure
 
 NO_ARCH=	yes
 
-OPTIONS_DEFINE=	DOCS EXAMPLES PGTEST SQLITETEST
-PGTEST_DESC=	Test PostGreSQL
-SQLITETEST_DESC=Test SQLite
+OPTIONS_DEFINE=	DOCS EXAMPLES
 
-PGTEST_RUN_DEPENDS=	p5-DBD-Pg>=3:databases/p5-DBD-Pg
-PGTEST_BUILD_DEPENDS=	p5-DBD-Pg>=3:databases/p5-DBD-Pg
-SQLITETEST_RUN_DEPENDS=	p5-DBD-SQLite>=1:databases/p5-DBD-SQLite
-SQLITETEST_BUILD_DEPENDS=	p5-DBD-SQLite>=1:databases/p5-DBD-SQLite
-
-SHEBANG_FILES=	examples/*.pl examples/*/*.pl
+SHEBANG_GLOB=	*.pl
 
 post-install-DOCS-on:
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}

Modified: head/biology/p5-BioPerl/distinfo
==============================================================================
--- head/biology/p5-BioPerl/distinfo	Sat Sep  7 22:43:57 2019	(r511436)
+++ head/biology/p5-BioPerl/distinfo	Sat Sep  7 22:44:02 2019	(r511437)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1565523237
-SHA256 (BioPerl-1.7.5.tar.gz) = 4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a
-SIZE (BioPerl-1.7.5.tar.gz) = 7512326
+TIMESTAMP = 1567842458
+SHA256 (BioPerl-1.7.6.tar.gz) = df2a3efc991b9b5d7cc9d038a1452c6dac910c9ad2a0e47e408dd692c111688d
+SIZE (BioPerl-1.7.6.tar.gz) = 7514084

Modified: head/biology/p5-BioPerl/pkg-plist
==============================================================================
--- head/biology/p5-BioPerl/pkg-plist	Sat Sep  7 22:43:57 2019	(r511436)
+++ head/biology/p5-BioPerl/pkg-plist	Sat Sep  7 22:44:02 2019	(r511437)
@@ -2,7 +2,6 @@ bin/bp_aacomp
 bin/bp_bioflat_index
 bin/bp_biogetseq
 bin/bp_chaos_plot
-bin/bp_classify_hits_kingdom
 bin/bp_dbsplit
 bin/bp_extract_feature_seq
 bin/bp_fastam9_to_table
@@ -516,7 +515,6 @@ bin/bp_unflatten_seq
 %%PERL5_MAN1%%/bp_bioflat_index.1.gz
 %%PERL5_MAN1%%/bp_biogetseq.1.gz
 %%PERL5_MAN1%%/bp_chaos_plot.1.gz
-%%PERL5_MAN1%%/bp_classify_hits_kingdom.1.gz
 %%PERL5_MAN1%%/bp_dbsplit.1.gz
 %%PERL5_MAN1%%/bp_extract_feature_seq.1.gz
 %%PERL5_MAN1%%/bp_fastam9_to_table.1.gz
@@ -1035,6 +1033,7 @@ bin/bp_unflatten_seq
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/align_on_codons.pl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/aligntutorial.pl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/align/simplealign.pl
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/classify_hits_kingdom
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/nmrpdb_parse.pl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/prosite2perl.pl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/contributed/rebase2list.pl