svn commit: r501199 - head/biology/stacks
Jason W. Bacon
jwb at FreeBSD.org
Fri May 10 21:04:45 UTC 2019
Author: jwb
Date: Fri May 10 21:04:43 2019
New Revision: 501199
URL: https://svnweb.freebsd.org/changeset/ports/501199
Log:
biology/stacks: Upgrade to 2.4
Improve check to avoid outdated GCC on 2nd tier platforms
Reported by: portscout
Modified:
head/biology/stacks/Makefile
head/biology/stacks/distinfo
head/biology/stacks/pkg-plist
Modified: head/biology/stacks/Makefile
==============================================================================
--- head/biology/stacks/Makefile Fri May 10 20:33:17 2019 (r501198)
+++ head/biology/stacks/Makefile Fri May 10 21:04:43 2019 (r501199)
@@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= stacks
-DISTVERSION= 2.3
+DISTVERSION= 2.4
CATEGORIES= biology perl5 python
MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/
@@ -21,7 +21,8 @@ LDFLAGS+= -lpthread
.include <bsd.port.pre.mk>
-.if ${ARCH} != amd64 && ${ARCH} != i386
+# Force newer GCC on platforms using GCC 4.2 as base
+.if ${CHOSEN_COMPILER_TYPE} == gcc
USE_GCC= yes
.endif
Modified: head/biology/stacks/distinfo
==============================================================================
--- head/biology/stacks/distinfo Fri May 10 20:33:17 2019 (r501198)
+++ head/biology/stacks/distinfo Fri May 10 21:04:43 2019 (r501199)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1547306940
-SHA256 (stacks-2.3.tar.gz) = 2a5befaf11ca2f191afcd42a3a3392290d6a116d7fe737b69a2c4d5b77f40c99
-SIZE (stacks-2.3.tar.gz) = 10962586
+TIMESTAMP = 1557519159
+SHA256 (stacks-2.4.tar.gz) = 30093d688a2dc62a19ea42a58065f024c8279419439049bcde186703e75641c1
+SIZE (stacks-2.4.tar.gz) = 10930616
Modified: head/biology/stacks/pkg-plist
==============================================================================
--- head/biology/stacks/pkg-plist Fri May 10 20:33:17 2019 (r501198)
+++ head/biology/stacks/pkg-plist Fri May 10 21:04:43 2019 (r501199)
@@ -16,50 +16,3 @@ bin/stacks-gdb
bin/stacks-integrate-alignments
bin/tsv2bam
bin/ustacks
-%%DATADIR%%/php/CatalogClass.php
-%%DATADIR%%/php/Locus.php
-%%DATADIR%%/php/ajax.js
-%%DATADIR%%/php/annotate.js
-%%DATADIR%%/php/annotate_marker.php
-%%DATADIR%%/php/catalog.php
-%%DATADIR%%/php/catalog_genotypes.php
-%%DATADIR%%/php/constants.php.dist
-%%DATADIR%%/php/correct_genotype.php
-%%DATADIR%%/php/correct_genotypes.php
-%%DATADIR%%/php/db_functions.php
-%%DATADIR%%/php/export.js
-%%DATADIR%%/php/export_batch.php
-%%DATADIR%%/php/fst_view.php
-%%DATADIR%%/php/hapstat_view.php
-%%DATADIR%%/php/header.php
-%%DATADIR%%/php/images/caret-d.png
-%%DATADIR%%/php/images/caret-u.png
-%%DATADIR%%/php/images/excel_icon.png
-%%DATADIR%%/php/images/l-arrow-disabled.png
-%%DATADIR%%/php/images/l-arrow.png
-%%DATADIR%%/php/images/r-arrow-disabled.png
-%%DATADIR%%/php/images/r-arrow.png
-%%DATADIR%%/php/images/stacks_bg.png
-%%DATADIR%%/php/images/stacks_logo_rev_small.png
-%%DATADIR%%/php/index.php
-%%DATADIR%%/php/last_modified.php
-%%DATADIR%%/php/phist_view.php
-%%DATADIR%%/php/pop_view.php
-%%DATADIR%%/php/population_view.js
-%%DATADIR%%/php/samples.php
-%%DATADIR%%/php/sequence_blast.php
-%%DATADIR%%/php/stack_view.php
-%%DATADIR%%/php/stacks.css
-%%DATADIR%%/php/stacks.js
-%%DATADIR%%/php/stacks_functions.php
-%%DATADIR%%/php/sumstat_view.php
-%%DATADIR%%/php/tag.php
-%%DATADIR%%/php/tags.php
-%%DATADIR%%/php/version.php
-%%DATADIR%%/php/view_sequence.php
-%%DATADIR%%/sql/catalog_index.sql
-%%DATADIR%%/sql/chr_index.sql
-%%DATADIR%%/sql/mysql.cnf.dist
-%%DATADIR%%/sql/stacks.sql
-%%DATADIR%%/sql/tag_index.sql
- at dir %%DATADIR%%/php/export
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