svn commit: r492079 - in head/biology: . figtree
Yuri Victorovich
yuri at FreeBSD.org
Sun Feb 3 21:14:40 UTC 2019
Author: yuri
Date: Sun Feb 3 21:14:38 2019
New Revision: 492079
URL: https://svnweb.freebsd.org/changeset/ports/492079
Log:
New port: biology/figtree: Graphical viewer of phylogenetic trees
Added:
head/biology/figtree/
head/biology/figtree/Makefile (contents, props changed)
head/biology/figtree/distinfo (contents, props changed)
head/biology/figtree/pkg-descr (contents, props changed)
Modified:
head/biology/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Sun Feb 3 21:04:24 2019 (r492078)
+++ head/biology/Makefile Sun Feb 3 21:14:38 2019 (r492079)
@@ -36,6 +36,7 @@
SUBDIR += fastqc
SUBDIR += fasttree
SUBDIR += fastx-toolkit
+ SUBDIR += figtree
SUBDIR += fluctuate
SUBDIR += freebayes
SUBDIR += garlic
Added: head/biology/figtree/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/figtree/Makefile Sun Feb 3 21:14:38 2019 (r492079)
@@ -0,0 +1,38 @@
+# $FreeBSD$
+
+PORTNAME= figtree
+DISTVERSIONPREFIX= v
+DISTVERSION= 1.4.4
+CATEGORIES= biology java
+
+MAINTAINER= yuri at FreeBSD.org
+COMMENT= Graphical viewer of phylogenetic trees
+
+LICENSE= GPLv2
+
+USE_JAVA= yes
+USE_ANT= yes
+USE_GITHUB= yes
+GH_ACCOUNT= rambaut
+
+NO_ARCH= yes
+
+DESKTOP_ENTRIES="FigTree" "Phylogenetic tree viewer" "${PREFIX}/share/pixmaps/${PORTNAME}.png" "${PORTNAME}" \
+ "Biology;Science;Education;" true
+
+PLIST_FILES= bin/${PORTNAME} \
+ ${JAVAJARDIR}/${PORTNAME}-pdf.jar \
+ ${JAVAJARDIR}/${PORTNAME}.jar \
+ ${JAVAJARDIR}/figtreepanel.jar \
+ share/pixmaps/${PORTNAME}.png \
+
+do-install:
+ @(echo "#!/bin/sh"; \
+ echo ""; \
+ echo ${JAVA} -jar ${JAVAJARDIR}/${PORTNAME}.jar \
+ ) > ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
+ @${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/${PORTNAME}
+ ${INSTALL_DATA} ${WRKSRC}/dist/*.jar ${STAGEDIR}${JAVAJARDIR}
+ ${INSTALL_DATA} ${WRKSRC}/release/Linux/icons/${PORTNAME}.png ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png
+
+.include <bsd.port.mk>
Added: head/biology/figtree/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/figtree/distinfo Sun Feb 3 21:14:38 2019 (r492079)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1549226829
+SHA256 (rambaut-figtree-v1.4.4_GH0.tar.gz) = 29a2e7fb2de0fa213aa0bb3003347fe278c28d8273bbc06f1d98cda9dda35d89
+SIZE (rambaut-figtree-v1.4.4_GH0.tar.gz) = 20994009
Added: head/biology/figtree/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/figtree/pkg-descr Sun Feb 3 21:14:38 2019 (r492079)
@@ -0,0 +1,7 @@
+FigTree is designed as a graphical viewer of phylogenetic trees and as a program
+for producing publication-ready figures. As with most of my programs, it was
+written for my own needs so may not be as polished and feature-complete as a
+commercial program. In particular it is designed to display summarized and
+annotated trees produced by BEAST.
+
+WWW: http://tree.bio.ed.ac.uk/software/figtree/
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