svn commit: r519320 - in head/biology: . p5-Bio-Variation

[Sunpoet Po-Chuan Hsieh]

Author: sunpoet
Date: Sun Dec  8 16:49:31 2019
New Revision: 519320
URL: https://svnweb.freebsd.org/changeset/ports/519320

Log:
  Add p5-Bio-Variation 1.7.4
  
  Bio::Variation::* provides BioPerl variation-related functionality.
  
  WWW: https://metacpan.org/release/Bio-Variation

Added:
  head/biology/p5-Bio-Variation/
  head/biology/p5-Bio-Variation/Makefile   (contents, props changed)
  head/biology/p5-Bio-Variation/distinfo   (contents, props changed)
  head/biology/p5-Bio-Variation/pkg-descr   (contents, props changed)
  head/biology/p5-Bio-Variation/pkg-plist   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Sun Dec  8 16:49:25 2019	(r519319)
+++ head/biology/Makefile	Sun Dec  8 16:49:31 2019	(r519320)
@@ -98,6 +98,7 @@
     SUBDIR += p5-Bio-NEXUS
     SUBDIR += p5-Bio-Phylo
     SUBDIR += p5-Bio-SCF
+    SUBDIR += p5-Bio-Variation
     SUBDIR += p5-BioPerl
     SUBDIR += p5-BioPerl-Run
     SUBDIR += p5-TrimGalore

Added: head/biology/p5-Bio-Variation/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Variation/Makefile	Sun Dec  8 16:49:31 2019	(r519320)
@@ -0,0 +1,30 @@
+# Created by: Po-Chuan Hsieh <sunpoet at FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME=	Bio-Variation
+PORTVERSION=	1.7.4
+CATEGORIES=	biology perl5
+MASTER_SITES=	CPAN
+PKGNAMEPREFIX=	p5-
+
+MAINTAINER=	sunpoet at FreeBSD.org
+COMMENT=	BioPerl variation-related functionality
+
+LICENSE=	ART10 GPLv1+
+LICENSE_COMB=	dual
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+BUILD_DEPENDS=	${RUN_DEPENDS}
+RUN_DEPENDS=	p5-Bio-DB-EMBL>=0:biology/p5-Bio-DB-EMBL \
+		p5-Bio-DB-NCBIHelper>=0:biology/p5-Bio-DB-NCBIHelper \
+		p5-BioPerl>=0:biology/p5-BioPerl \
+		p5-IO-String>=0:devel/p5-IO-String \
+		p5-XML-Twig>=0:textproc/p5-XML-Twig \
+		p5-XML-Writer>=0.400:textproc/p5-XML-Writer
+
+USES=		perl5
+USE_PERL5=	configure
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

Added: head/biology/p5-Bio-Variation/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Variation/distinfo	Sun Dec  8 16:49:31 2019	(r519320)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1575793787
+SHA256 (Bio-Variation-1.7.4.tar.gz) = b5dc609c5bbd39937cdce0e5cbf299a2e2cf30c235fe6f71c904ae7dc1697b56
+SIZE (Bio-Variation-1.7.4.tar.gz) = 60449

Added: head/biology/p5-Bio-Variation/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Variation/pkg-descr	Sun Dec  8 16:49:31 2019	(r519320)
@@ -0,0 +1,3 @@
+Bio::Variation::* provides BioPerl variation-related functionality.
+
+WWW: https://metacpan.org/release/Bio-Variation

Added: head/biology/p5-Bio-Variation/pkg-plist
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Variation/pkg-plist	Sun Dec  8 16:49:31 2019	(r519320)
@@ -0,0 +1,27 @@
+bin/bp_flanks
+%%SITE_PERL%%/Bio/Variation.pm
+%%SITE_PERL%%/Bio/Variation/AAChange.pm
+%%SITE_PERL%%/Bio/Variation/AAReverseMutate.pm
+%%SITE_PERL%%/Bio/Variation/Allele.pm
+%%SITE_PERL%%/Bio/Variation/DNAMutation.pm
+%%SITE_PERL%%/Bio/Variation/IO.pm
+%%SITE_PERL%%/Bio/Variation/IO/flat.pm
+%%SITE_PERL%%/Bio/Variation/IO/xml.pm
+%%SITE_PERL%%/Bio/Variation/README
+%%SITE_PERL%%/Bio/Variation/RNAChange.pm
+%%SITE_PERL%%/Bio/Variation/SNP.pm
+%%SITE_PERL%%/Bio/Variation/SeqDiff.pm
+%%SITE_PERL%%/Bio/Variation/VariantI.pm
+%%PERL5_MAN1%%/bp_flanks.1.gz
+%%PERL5_MAN3%%/Bio::Variation.3.gz
+%%PERL5_MAN3%%/Bio::Variation::AAChange.3.gz
+%%PERL5_MAN3%%/Bio::Variation::AAReverseMutate.3.gz
+%%PERL5_MAN3%%/Bio::Variation::Allele.3.gz
+%%PERL5_MAN3%%/Bio::Variation::DNAMutation.3.gz
+%%PERL5_MAN3%%/Bio::Variation::IO.3.gz
+%%PERL5_MAN3%%/Bio::Variation::IO::flat.3.gz
+%%PERL5_MAN3%%/Bio::Variation::IO::xml.3.gz
+%%PERL5_MAN3%%/Bio::Variation::RNAChange.3.gz
+%%PERL5_MAN3%%/Bio::Variation::SNP.3.gz
+%%PERL5_MAN3%%/Bio::Variation::SeqDiff.3.gz
+%%PERL5_MAN3%%/Bio::Variation::VariantI.3.gz