svn commit: r510395 - in head/biology/ngs-sdk: . files
Yuri Victorovich
yuri at FreeBSD.org
Sat Aug 31 15:09:48 UTC 2019
Author: yuri
Date: Sat Aug 31 15:09:47 2019
New Revision: 510395
URL: https://svnweb.freebsd.org/changeset/ports/510395
Log:
biology/ngs-sdk: Update 2.9.6 -> 2.10.0
Reported by: portscout
Modified:
head/biology/ngs-sdk/Makefile
head/biology/ngs-sdk/distinfo
head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl
head/biology/ngs-sdk/pkg-plist
Modified: head/biology/ngs-sdk/Makefile
==============================================================================
--- head/biology/ngs-sdk/Makefile Sat Aug 31 15:03:00 2019 (r510394)
+++ head/biology/ngs-sdk/Makefile Sat Aug 31 15:09:47 2019 (r510395)
@@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= ngs
-DISTVERSION= 2.9.6
+DISTVERSION= 2.10.0
CATEGORIES= biology
PKGNAMESUFFIX= -sdk
Modified: head/biology/ngs-sdk/distinfo
==============================================================================
--- head/biology/ngs-sdk/distinfo Sat Aug 31 15:03:00 2019 (r510394)
+++ head/biology/ngs-sdk/distinfo Sat Aug 31 15:09:47 2019 (r510395)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1554002979
-SHA256 (ncbi-ngs-2.9.6_GH0.tar.gz) = 4be42f4d62b2376dc2fc4cd992822525bd99f8e1193008c2dab387a2f291405b
-SIZE (ncbi-ngs-2.9.6_GH0.tar.gz) = 1092167
+TIMESTAMP = 1567263810
+SHA256 (ncbi-ngs-2.10.0_GH0.tar.gz) = 4139adff83af213d7880bc80d1c0f5ee9b00c6c4e615d00aa47aaa267e40ed25
+SIZE (ncbi-ngs-2.10.0_GH0.tar.gz) = 1093883
Modified: head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl
==============================================================================
--- head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl Sat Aug 31 15:03:00 2019 (r510394)
+++ head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl Sat Aug 31 15:09:47 2019 (r510395)
@@ -1,6 +1,6 @@
---- ngs-sdk/setup/konfigure.perl.orig 2018-02-23 22:53:52 UTC
+--- ngs-sdk/setup/konfigure.perl.orig 2019-08-20 18:05:02 UTC
+++ ngs-sdk/setup/konfigure.perl
-@@ -202,7 +202,7 @@ print "checking system type... " unless
+@@ -202,7 +202,7 @@ print "checking system type... " unless ($AUTORUN);
my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch();
println $OSTYPE unless ($AUTORUN);
@@ -9,7 +9,7 @@
println "configure: error: unsupported system '$OSTYPE'";
exit 1;
}
-@@ -215,6 +215,10 @@ if ($OS eq 'linux') {
+@@ -221,6 +221,10 @@ if ($OS eq 'linux') {
println $OS_DISTRIBUTOR unless ($AUTORUN);
}
@@ -20,7 +20,7 @@
print "checking machine architecture... " unless ($AUTORUN);
println $MARCH unless ($AUTORUN);
unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
-@@ -326,6 +330,16 @@ if ($OSTYPE =~ /linux/i) {
+@@ -332,6 +336,16 @@ if ($OSTYPE =~ /linux/i) {
$EXEX = '';
$OSINC = 'unix';
$TOOLS = 'gcc' unless ($TOOLS);
@@ -37,11 +37,11 @@
} elsif ($OSTYPE =~ /darwin/i) {
$LPFX = 'lib';
$OBJX = 'o';
-@@ -371,11 +385,11 @@ if ($TOOLS =~ /gcc$/) {
+@@ -377,11 +391,11 @@ if ($TOOLS =~ /gcc$/) {
} elsif ($TOOLS eq 'clang') {
$CPP = 'clang++' unless ($CPP);
$CC = 'clang -c';
-- my $versionMin = '-mmacosx-version-min=10.6';
+- my $versionMin = '-mmacosx-version-min=10.10';
+ my $versionMin = '';
$CP = "$CPP -c $versionMin";
if ($BITS ne '32_64') {
@@ -51,7 +51,7 @@
$AR = 'ar rc';
$LD = "clang $ARCH_FL";
$LP = "$CPP $versionMin $ARCH_FL";
-@@ -463,7 +477,7 @@ foreach my $href (DEPENDS()) {
+@@ -478,7 +492,7 @@ foreach my $href (DEPENDS()) {
$I = $t if (-e $t);
}
push ( @L, File::Spec->catdir($OPT{$o}, 'lib') );
@@ -60,7 +60,7 @@
}
my ($i, $l) = find_lib($_, $I, @L);
if (defined $i || $l) {
-@@ -881,8 +895,7 @@ EndText
+@@ -898,8 +912,7 @@ EndText
L($F, "PIC = $PIC") if ($PIC);
if ($PKG{LNG} eq 'C') {
if ($TOOLS =~ /clang/i) {
Modified: head/biology/ngs-sdk/pkg-plist
==============================================================================
--- head/biology/ngs-sdk/pkg-plist Sat Aug 31 15:03:00 2019 (r510394)
+++ head/biology/ngs-sdk/pkg-plist Sat Aug 31 15:09:47 2019 (r510395)
@@ -92,4 +92,4 @@ lib/libngs-adapt-c++.a
lib/libngs-c++.a
lib/libngs-sdk.so
lib/libngs-sdk.so.2
-lib/libngs-sdk.so.2.9.6
+lib/libngs-sdk.so.2.10.0
More information about the svn-ports-head
mailing list