svn commit: r508637 - head/biology/p5-BioPerl

[Sunpoet Po-Chuan Hsieh]

Author: sunpoet
Date: Sun Aug 11 16:49:24 2019
New Revision: 508637
URL: https://svnweb.freebsd.org/changeset/ports/508637

Log:
  Update to 1.007005 (1.7.5)
  
  - Fix DISTNAME
  - Bump PORTREVISION for package change
  
  Changes:	https://metacpan.org/changes/distribution/BioPerl

Modified:
  head/biology/p5-BioPerl/Makefile
  head/biology/p5-BioPerl/distinfo
  head/biology/p5-BioPerl/pkg-plist

Modified: head/biology/p5-BioPerl/Makefile
==============================================================================
--- head/biology/p5-BioPerl/Makefile	Sun Aug 11 16:47:44 2019	(r508636)
+++ head/biology/p5-BioPerl/Makefile	Sun Aug 11 16:49:24 2019	(r508637)
@@ -3,11 +3,12 @@
 
 PORTNAME=	BioPerl
 PORTVERSION=	1.007005
+PORTREVISION=	1
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 MASTER_SITE_SUBDIR=	CPAN:CDRAUG
 PKGNAMEPREFIX=	p5-
-DISTNAME=	${PORTNAME}-1.7.4
+DISTNAME=	${PORTNAME}-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g}
 
 MAINTAINER=	sunpoet at FreeBSD.org
 COMMENT=	Collection of Perl modules for bioinformatics

Modified: head/biology/p5-BioPerl/distinfo
==============================================================================
--- head/biology/p5-BioPerl/distinfo	Sun Aug 11 16:47:44 2019	(r508636)
+++ head/biology/p5-BioPerl/distinfo	Sun Aug 11 16:49:24 2019	(r508637)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1550843244
-SHA256 (BioPerl-1.7.4.tar.gz) = 5a074947bba299cdb47cbf1c66689502db02c022fc138459e3393da45d7c707b
-SIZE (BioPerl-1.7.4.tar.gz) = 7642013
+TIMESTAMP = 1565523237
+SHA256 (BioPerl-1.7.5.tar.gz) = 4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a
+SIZE (BioPerl-1.7.5.tar.gz) = 7512326

Modified: head/biology/p5-BioPerl/pkg-plist
==============================================================================
--- head/biology/p5-BioPerl/pkg-plist	Sun Aug 11 16:47:44 2019	(r508636)
+++ head/biology/p5-BioPerl/pkg-plist	Sun Aug 11 16:49:24 2019	(r508637)
@@ -329,7 +329,6 @@ bin/bp_unflatten_seq
 %%SITE_PERL%%/Bio/Seq/SeqBuilder.pm
 %%SITE_PERL%%/Bio/Seq/SeqFactory.pm
 %%SITE_PERL%%/Bio/Seq/SeqFastaSpeedFactory.pm
-%%SITE_PERL%%/Bio/Seq/SeqWithQuality.pm
 %%SITE_PERL%%/Bio/Seq/SequenceTrace.pm
 %%SITE_PERL%%/Bio/Seq/SimulatedRead.pm
 %%SITE_PERL%%/Bio/Seq/TraceI.pm
@@ -412,13 +411,6 @@ bin/bp_unflatten_seq
 %%SITE_PERL%%/Bio/SimpleAlign.pm
 %%SITE_PERL%%/Bio/SimpleAnalysisI.pm
 %%SITE_PERL%%/Bio/Species.pm
-%%SITE_PERL%%/Bio/Symbol/Alphabet.pm
-%%SITE_PERL%%/Bio/Symbol/AlphabetI.pm
-%%SITE_PERL%%/Bio/Symbol/DNAAlphabet.pm
-%%SITE_PERL%%/Bio/Symbol/ProteinAlphabet.pm
-%%SITE_PERL%%/Bio/Symbol/README.Symbol
-%%SITE_PERL%%/Bio/Symbol/Symbol.pm
-%%SITE_PERL%%/Bio/Symbol/SymbolI.pm
 %%SITE_PERL%%/Bio/Taxon.pm
 %%SITE_PERL%%/Bio/Tools/Alignment/Consed.pm
 %%SITE_PERL%%/Bio/Tools/Alignment/Trim.pm
@@ -474,7 +466,6 @@ bin/bp_unflatten_seq
 %%SITE_PERL%%/Bio/Tools/Run/GenericParameters.pm
 %%SITE_PERL%%/Bio/Tools/Run/ParametersI.pm
 %%SITE_PERL%%/Bio/Tools/Run/Phylo/PhyloBase.pm
-%%SITE_PERL%%/Bio/Tools/Run/README
 %%SITE_PERL%%/Bio/Tools/Run/WrapperBase.pm
 %%SITE_PERL%%/Bio/Tools/Run/WrapperBase/CommandExts.pm
 %%SITE_PERL%%/Bio/Tools/Seg.pm
@@ -852,7 +843,6 @@ bin/bp_unflatten_seq
 %%PERL5_MAN3%%/Bio::Seq::SeqBuilder.3.gz
 %%PERL5_MAN3%%/Bio::Seq::SeqFactory.3.gz
 %%PERL5_MAN3%%/Bio::Seq::SeqFastaSpeedFactory.3.gz
-%%PERL5_MAN3%%/Bio::Seq::SeqWithQuality.3.gz
 %%PERL5_MAN3%%/Bio::Seq::SequenceTrace.3.gz
 %%PERL5_MAN3%%/Bio::Seq::SimulatedRead.3.gz
 %%PERL5_MAN3%%/Bio::Seq::TraceI.3.gz
@@ -935,12 +925,6 @@ bin/bp_unflatten_seq
 %%PERL5_MAN3%%/Bio::SimpleAlign.3.gz
 %%PERL5_MAN3%%/Bio::SimpleAnalysisI.3.gz
 %%PERL5_MAN3%%/Bio::Species.3.gz
-%%PERL5_MAN3%%/Bio::Symbol::Alphabet.3.gz
-%%PERL5_MAN3%%/Bio::Symbol::AlphabetI.3.gz
-%%PERL5_MAN3%%/Bio::Symbol::DNAAlphabet.3.gz
-%%PERL5_MAN3%%/Bio::Symbol::ProteinAlphabet.3.gz
-%%PERL5_MAN3%%/Bio::Symbol::Symbol.3.gz
-%%PERL5_MAN3%%/Bio::Symbol::SymbolI.3.gz
 %%PERL5_MAN3%%/Bio::Taxon.3.gz
 %%PERL5_MAN3%%/Bio::Tools::Alignment::Consed.3.gz
 %%PERL5_MAN3%%/Bio::Tools::Alignment::Trim.3.gz