svn commit: r497621 - in head/science/coot: . files
Yuri Victorovich
yuri at FreeBSD.org
Wed Apr 3 05:01:13 UTC 2019
Author: yuri
Date: Wed Apr 3 05:01:11 2019
New Revision: 497621
URL: https://svnweb.freebsd.org/changeset/ports/497621
Log:
science/coot: Update 0.8.9.1 -> 0.8.9.2
* Add goocanvas dependency
* Add fftw dependency
Reported by: portscout
Modified:
head/science/coot/Makefile
head/science/coot/distinfo
head/science/coot/files/patch-src_cc-interface-image.hh
head/science/coot/pkg-plist
Modified: head/science/coot/Makefile
==============================================================================
--- head/science/coot/Makefile Wed Apr 3 04:41:20 2019 (r497620)
+++ head/science/coot/Makefile Wed Apr 3 05:01:11 2019 (r497621)
@@ -1,8 +1,7 @@
# $FreeBSD$
PORTNAME= coot
-DISTVERSION= 0.8.9.1
-PORTREVISION= 2
+DISTVERSION= 0.8.9.2
CATEGORIES= science
MASTER_SITES= https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/${PORTNAME}/source/releases/ \
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/${PORTNAME}/dependencies/:data
@@ -15,11 +14,13 @@ COMMENT= Crystallographic Object-Oriented Toolkit
LICENSE= LGPL3
LICENSE_FILE= ${WRKSRC}/COPYING
+BUILD_DEPENDS= fftw>0:math/fftw
LIB_DEPENDS= libccp4c.so:science/libccp4 \
libclipper-core.so:science/clipper \
libcurl.so:ftp/curl \
libfontconfig.so:x11-fonts/fontconfig \
libfreetype.so:print/freetype2 \
+ libgoocanvas.so:graphics/goocanvas \
libgtkglext-x11-1.0.so:x11-toolkits/gtkglext \
libgsl.so:math/gsl \
libmmdb2.so:science/mmdb2 \
@@ -31,7 +32,7 @@ RUN_DEPENDS= bash:shells/bash
USES= desktop-file-utils fortran gettext-runtime gl gmake gnome libtool localbase:ldflags pkgconfig python:2.7 shebangfix sqlite
SHEBANG_FILES= src/coot.in
GNU_CONFIGURE= yes
-CONFIGURE_ARGS= --enable-shared --disable-static
+CONFIGURE_ARGS= --enable-shared --disable-static --with-goocanvas-prefix=${LOCALBASE}
USE_GNOME= atk cairo gdkpixbuf2 glib20 gtk20 libartlgpl2 libgnomecanvas pango pangox-compat
USE_GL= gl glu glut
USE_XORG= ice sm x11 xmu xt
Modified: head/science/coot/distinfo
==============================================================================
--- head/science/coot/distinfo Wed Apr 3 04:41:20 2019 (r497620)
+++ head/science/coot/distinfo Wed Apr 3 05:01:11 2019 (r497621)
@@ -1,6 +1,6 @@
-TIMESTAMP = 1531013796
-SHA256 (coot/coot-0.8.9.1.tar.gz) = 51b6faef11177a8ab682fbe28448f935ae1252ad53b4efa31339ff658a63ff94
-SIZE (coot/coot-0.8.9.1.tar.gz) = 19360553
+TIMESTAMP = 1554259683
+SHA256 (coot/coot-0.8.9.2.tar.gz) = f24ed258e43ea31452b54c62649c071aa15f356d077dce0dab94eb04f27a6625
+SIZE (coot/coot-0.8.9.2.tar.gz) = 19635513
SHA256 (coot/refmac-monomer-library.tar.gz) = 03562eec612103a48bd114cfe0d171943e88f94b84610d16d542cda138e5f36b
SIZE (coot/refmac-monomer-library.tar.gz) = 37439851
SHA256 (coot/reference-structures.tar.gz) = 44db38506f0f90c097d4855ad81a82a36b49cd1e3ffe7d6ee4728b15109e281a
Modified: head/science/coot/files/patch-src_cc-interface-image.hh
==============================================================================
--- head/science/coot/files/patch-src_cc-interface-image.hh Wed Apr 3 04:41:20 2019 (r497620)
+++ head/science/coot/files/patch-src_cc-interface-image.hh Wed Apr 3 05:01:11 2019 (r497621)
@@ -1,7 +1,8 @@
---- src/cc-interface-image.hh.orig 2018-07-08 02:10:49 UTC
+--- src/cc-interface-image.hh.orig 2018-06-08 16:50:29 UTC
+++ src/cc-interface-image.hh
-@@ -1,4 +1,5 @@
+@@ -1,5 +1,6 @@
+ #ifdef USE_PYTHON
+#include <Python.h>
// make a png given the info in text_info_dict
Modified: head/science/coot/pkg-plist
==============================================================================
--- head/science/coot/pkg-plist Wed Apr 3 04:41:20 2019 (r497620)
+++ head/science/coot/pkg-plist Wed Apr 3 05:01:11 2019 (r497621)
@@ -24,11 +24,15 @@ include/coot/ccp4mg-utils/mgtree.h
include/coot/ccp4mg-utils/ppmutil.h
include/coot/ccp4mg-utils/quat.h
include/coot/compat/coot-getopt.h
+include/coot/compat/coot-sysdep.h
+include/coot/compat/getopt_int.h
+include/coot/compat/sleep-fixups.h
include/coot/coords/Bond_lines.h
include/coot/coords/Bond_lines_ext.h
include/coot/coords/Cartesian.h
include/coot/coords/coot-close.hh
include/coot/coords/cos-sin.h
+include/coot/coords/loop-path.hh
include/coot/coords/mmdb-crystal.h
include/coot/coords/mmdb-extras.h
include/coot/coords/mmdb.h
@@ -89,10 +93,12 @@ include/coot/ideal/lograma.h
include/coot/ideal/model-bond-deltas.hh
include/coot/ideal/parallel-planes.hh
include/coot/ideal/pepflip.hh
+include/coot/ideal/phi-psi.hh
include/coot/ideal/regularize-minimol.hh
include/coot/ideal/simple-restraint.hh
include/coot/ideal/test-indexing.hh
include/coot/ideal/torsion-bonds.hh
+include/coot/ideal/zo-rama.hh
include/coot/lbg/alerts.hh
include/coot/lbg/graphics-c-interface-functions.hh
include/coot/lbg/lbg-drag-and-drop.hh
@@ -260,6 +266,9 @@ lib/libcootilus.so.0.0.0
%%PYTHON_SITELIBDIR%%/coot/acedrg_link.py
%%PYTHON_SITELIBDIR%%/coot/acedrg_link.pyc
%%PYTHON_SITELIBDIR%%/coot/acedrg_link.pyo
+%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.py
+%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.pyc
+%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.pyo
%%PYTHON_SITELIBDIR%%/coot/americanisms.py
%%PYTHON_SITELIBDIR%%/coot/americanisms.pyc
%%PYTHON_SITELIBDIR%%/coot/americanisms.pyo
@@ -299,6 +308,9 @@ lib/libcootilus.so.0.0.0
%%PYTHON_SITELIBDIR%%/coot/coot_lsq.py
%%PYTHON_SITELIBDIR%%/coot/coot_lsq.pyc
%%PYTHON_SITELIBDIR%%/coot/coot_lsq.pyo
+%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.py
+%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.pyc
+%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.pyo
%%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.py
%%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.pyc
%%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.pyo
@@ -320,6 +332,9 @@ lib/libcootilus.so.0.0.0
%%PYTHON_SITELIBDIR%%/coot/filter.py
%%PYTHON_SITELIBDIR%%/coot/filter.pyc
%%PYTHON_SITELIBDIR%%/coot/filter.pyo
+%%PYTHON_SITELIBDIR%%/coot/find_baddies.py
+%%PYTHON_SITELIBDIR%%/coot/find_baddies.pyc
+%%PYTHON_SITELIBDIR%%/coot/find_baddies.pyo
%%PYTHON_SITELIBDIR%%/coot/fitting.py
%%PYTHON_SITELIBDIR%%/coot/fitting.pyc
%%PYTHON_SITELIBDIR%%/coot/fitting.pyo
@@ -14126,6 +14141,7 @@ share/applications/coot.desktop
%%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-2.tab
%%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-3.tab
%%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-6.tab
+%%DATADIR%%/link-by-torsion-to-NAG-core-NAG-SER.tab
%%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-2.tab
%%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-3.tab
%%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-6.tab
@@ -14183,13 +14199,14 @@ share/applications/coot.desktop
%%DATADIR%%/pixmaps/connect-to-oca.svg
%%DATADIR%%/pixmaps/connect-to-usf.svg
%%DATADIR%%/pixmaps/connect-to-world.svg
-%%DATADIR%%/pixmaps/coot-0.8.9.1.png
+%%DATADIR%%/pixmaps/coot-0.8.9.2.png
%%DATADIR%%/pixmaps/coot-favicon.png
%%DATADIR%%/pixmaps/coot-icon.png
%%DATADIR%%/pixmaps/coot-save-symm.png
%%DATADIR%%/pixmaps/coot-save.png
%%DATADIR%%/pixmaps/crosshairs.png
%%DATADIR%%/pixmaps/crosshairs.svg
+%%DATADIR%%/pixmaps/curlew-long.png
%%DATADIR%%/pixmaps/delete.png
%%DATADIR%%/pixmaps/delete.svg
%%DATADIR%%/pixmaps/density-fit.svg
@@ -14250,6 +14267,13 @@ share/applications/coot.desktop
%%DATADIR%%/pixmaps/pointer-distances.svg
%%DATADIR%%/pixmaps/probe-clash.svg
%%DATADIR%%/pixmaps/radacina_handcuffs-small.svg
+%%DATADIR%%/pixmaps/rama2_all.png
+%%DATADIR%%/pixmaps/rama2_gly.png
+%%DATADIR%%/pixmaps/rama2_ileval.png
+%%DATADIR%%/pixmaps/rama2_non_gly_pro.png
+%%DATADIR%%/pixmaps/rama2_non_gly_pro_pre_pro_ileval.png
+%%DATADIR%%/pixmaps/rama2_pre_pro.png
+%%DATADIR%%/pixmaps/rama2_pro.png
%%DATADIR%%/pixmaps/rama_all.png
%%DATADIR%%/pixmaps/rama_gly.png
%%DATADIR%%/pixmaps/rama_non_gly_pro.png
@@ -14391,6 +14415,7 @@ share/applications/coot.desktop
%%DATADIR%%/scheme/0-auto-rot.scm
%%DATADIR%%/scheme/3d-generator-import.scm
%%DATADIR%%/scheme/acedrg-link.scm
+%%DATADIR%%/scheme/add-linked-cho.scm
%%DATADIR%%/scheme/americanisms.scm
%%DATADIR%%/scheme/background-demo.scm
%%DATADIR%%/scheme/bit.scm
@@ -14415,6 +14440,7 @@ share/applications/coot.desktop
%%DATADIR%%/scheme/fascinating-things.scm
%%DATADIR%%/scheme/file-utils.scm
%%DATADIR%%/scheme/filter.scm
+%%DATADIR%%/scheme/find-baddies.scm
%%DATADIR%%/scheme/fitting.scm
%%DATADIR%%/scheme/gap.scm
%%DATADIR%%/scheme/generic-objects.scm
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