svn commit: r480837 - head/biology/tRNAscan-SE
Wen Heping
wen at FreeBSD.org
Fri Sep 28 00:12:50 UTC 2018
Author: wen
Date: Fri Sep 28 00:12:48 2018
New Revision: 480837
URL: https://svnweb.freebsd.org/changeset/ports/480837
Log:
- Unbreak by adding missing pkg-plist
PR: 228758
Submitted by: mzaki at niid.go.jp(maintainer)
Added:
head/biology/tRNAscan-SE/pkg-plist (contents, props changed)
Modified:
head/biology/tRNAscan-SE/Makefile
Modified: head/biology/tRNAscan-SE/Makefile
==============================================================================
--- head/biology/tRNAscan-SE/Makefile Thu Sep 27 23:28:15 2018 (r480836)
+++ head/biology/tRNAscan-SE/Makefile Fri Sep 28 00:12:48 2018 (r480837)
@@ -14,8 +14,6 @@ COMMENT= Searching for tRNA genes in genomic sequence
LICENSE= GPLv3+
LICENSE_FILE= ${WRKSRC}/COPYING
-BROKEN= missing plist
-
RUN_DEPENDS= cmsearch:biology/infernal
WRKSRC= ${WRKDIR}/${DISTNAME:S,.0$,,}
Added: head/biology/tRNAscan-SE/pkg-plist
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/tRNAscan-SE/pkg-plist Fri Sep 28 00:12:48 2018 (r480837)
@@ -0,0 +1,136 @@
+bin/EukHighConfidenceFilter
+bin/covels-SE
+bin/coves-SE
+bin/eufindtRNA
+bin/fasta2gsi
+bin/sstofa
+bin/tRNAscan-SE
+bin/trnascan-1.4
+etc/tRNAscan-SE.conf
+%%DATADIR%%/gcode/gcode.cilnuc
+%%DATADIR%%/gcode/gcode.echdmito
+%%DATADIR%%/gcode/gcode.invmito
+%%DATADIR%%/gcode/gcode.othmito
+%%DATADIR%%/gcode/gcode.vertmito
+%%DATADIR%%/gcode/gcode.ystmito
+%%DATADIR%%/models/Cren-eury-BHB-noncan.cm
+%%DATADIR%%/models/Dsignal
+%%DATADIR%%/models/ESELC.cm
+%%DATADIR%%/models/PSELC.cm
+%%DATADIR%%/models/TPCsignal
+%%DATADIR%%/models/TRNA2-arch.cm
+%%DATADIR%%/models/TRNA2-archns.cm
+%%DATADIR%%/models/TRNA2-bact.cm
+%%DATADIR%%/models/TRNA2-bactns.cm
+%%DATADIR%%/models/TRNA2-euk.cm
+%%DATADIR%%/models/TRNA2-eukns.cm
+%%DATADIR%%/models/TRNA2.cm
+%%DATADIR%%/models/TRNA2ns.cm
+%%DATADIR%%/models/TRNAinf-1415-ns.cm
+%%DATADIR%%/models/TRNAinf-1415.cm
+%%DATADIR%%/models/TRNAinf-arch-3h.cm
+%%DATADIR%%/models/TRNAinf-arch-5h.cm
+%%DATADIR%%/models/TRNAinf-arch-SeC.cm
+%%DATADIR%%/models/TRNAinf-arch-iso
+%%DATADIR%%/models/TRNAinf-arch-iso.i1f
+%%DATADIR%%/models/TRNAinf-arch-iso.i1i
+%%DATADIR%%/models/TRNAinf-arch-iso.i1m
+%%DATADIR%%/models/TRNAinf-arch-iso.i1p
+%%DATADIR%%/models/TRNAinf-arch-ns.cm
+%%DATADIR%%/models/TRNAinf-arch.cm
+%%DATADIR%%/models/TRNAinf-bact-SeC.cm
+%%DATADIR%%/models/TRNAinf-bact-iso
+%%DATADIR%%/models/TRNAinf-bact-iso.i1f
+%%DATADIR%%/models/TRNAinf-bact-iso.i1i
+%%DATADIR%%/models/TRNAinf-bact-iso.i1m
+%%DATADIR%%/models/TRNAinf-bact-iso.i1p
+%%DATADIR%%/models/TRNAinf-bact-ns.cm
+%%DATADIR%%/models/TRNAinf-bact.cm
+%%DATADIR%%/models/TRNAinf-euk-SeC.cm
+%%DATADIR%%/models/TRNAinf-euk-iso
+%%DATADIR%%/models/TRNAinf-euk-iso.i1f
+%%DATADIR%%/models/TRNAinf-euk-iso.i1i
+%%DATADIR%%/models/TRNAinf-euk-iso.i1m
+%%DATADIR%%/models/TRNAinf-euk-iso.i1p
+%%DATADIR%%/models/TRNAinf-euk-ns.cm
+%%DATADIR%%/models/TRNAinf-euk.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal
+%%DATADIR%%/models/TRNAinf-mito-mammal-Ala.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Arg.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Asn.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Asp.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Cys.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Gln.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Glu.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Gly.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-His.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Ile.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-LeuTAA.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-LeuTAG.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Lys.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Met.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Phe.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Pro.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-SerGCT.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-SerTGA.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Thr.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Trp.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Tyr.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal-Val.cm
+%%DATADIR%%/models/TRNAinf-mito-mammal.i1f
+%%DATADIR%%/models/TRNAinf-mito-mammal.i1i
+%%DATADIR%%/models/TRNAinf-mito-mammal.i1m
+%%DATADIR%%/models/TRNAinf-mito-mammal.i1p
+%%DATADIR%%/models/TRNAinf-mito-vert
+%%DATADIR%%/models/TRNAinf-mito-vert-Ala.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Arg.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Asn.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Asp.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Cys.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Gln.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Glu.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Gly.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-His.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Ile.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-LeuTAA.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-LeuTAG.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Lys.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Met.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Phe.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Pro.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-SerGCT.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-SerTGA.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Thr.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Trp.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Tyr.cm
+%%DATADIR%%/models/TRNAinf-mito-vert-Val.cm
+%%DATADIR%%/models/TRNAinf-mito-vert.i1f
+%%DATADIR%%/models/TRNAinf-mito-vert.i1i
+%%DATADIR%%/models/TRNAinf-mito-vert.i1m
+%%DATADIR%%/models/TRNAinf-mito-vert.i1p
+%%DATADIR%%/models/TRNAinf-ns.cm
+%%DATADIR%%/models/TRNAinf.cm
+%%DATADIR%%/models/Thaum-BHB-noncan.cm
+%%DATADIR%%/tRNAscanSE/ArrayCMscanResults.pm
+%%DATADIR%%/tRNAscanSE/ArraytRNA.pm
+%%DATADIR%%/tRNAscanSE/CM.pm
+%%DATADIR%%/tRNAscanSE/CMscanResultFile.pm
+%%DATADIR%%/tRNAscanSE/Configuration.pm
+%%DATADIR%%/tRNAscanSE/Eufind.pm
+%%DATADIR%%/tRNAscanSE/FpScanResultFile.pm
+%%DATADIR%%/tRNAscanSE/GeneticCode.pm
+%%DATADIR%%/tRNAscanSE/IntResultFile.pm
+%%DATADIR%%/tRNAscanSE/LogFile.pm
+%%DATADIR%%/tRNAscanSE/MultiResultFile.pm
+%%DATADIR%%/tRNAscanSE/Options.pm
+%%DATADIR%%/tRNAscanSE/ResultFileReader.pm
+%%DATADIR%%/tRNAscanSE/SS.pm
+%%DATADIR%%/tRNAscanSE/ScanResult.pm
+%%DATADIR%%/tRNAscanSE/Sequence.pm
+%%DATADIR%%/tRNAscanSE/SprinzlAlign.pm
+%%DATADIR%%/tRNAscanSE/SprinzlAlignResults.pm
+%%DATADIR%%/tRNAscanSE/SprinzlPos.pm
+%%DATADIR%%/tRNAscanSE/Stats.pm
+%%DATADIR%%/tRNAscanSE/Tscan.pm
+%%DATADIR%%/tRNAscanSE/Utils.pm
+%%DATADIR%%/tRNAscanSE/tRNA.pm
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